Planet R http://planetr.stderr.org/atom.xml 2008-07-25T07:31:46+00:00 Planet/2.0 +http://www.planetplanet.org Wordpress for iphone http://jackman.stanford.edu/blog/?p=822 2008-07-25T05:51:43+00:00 <p>Wow, so this wordpress for iPhone app seems like it might actually work. </p> <p>Greetings from UA 863, waiting to push back from gate 94 at SFO.</p> Simon Jackman http://jackman.stanford.edu/blog simon jackman's blog » computing observations on politics, statistics and computing from Stanford, California http://jackman.stanford.edu/blog/wp-rss2.php?cat=4 2008-07-25T06:00:32+00:00 tips:spatial-data:when_to_use - start adding items http://wiki.r-project.org/rwiki/doku.php?id=tips:spatial-data:when_to_use&amp;do=diff1216899479 2008-07-24T12:37:59+00:00 What belongs here is a description of the class of problems for which R spatial is a solution and a gentle hint about how to define the class of problems for which a GIS is a better solution. R Spatial Can R can analyse spatial data, see CRAN Spa... Anne Ghisla a.ghisla@studenti.uninsubria.it http://wiki.r-project.org/rwiki/ R Wiki http://wiki.r-project.org/rwiki/feed.php 2008-07-25T07:30:53+00:00 Wordling the blog tag:blog.lordsutch.com,2008-07-22:4106 2008-07-22T03:33:20+00:00 <p>Via <a href="http://www.poliblogger.com/?p=13944" title="PoliBlog (TM): A Rough Draft of my Thoughts &raquo; Wordle of VaV">PoliBlog</a>, here&rsquo;s the Wordle of the blog of late:</p> <p><a href="http://wordle.net/gallery/wrdl/80682/Signifying_Nothing" title="Wordle: Signifying Nothing"><img src="http://wordle.net/thumb/wrdl/80682/Signifying_Nothing" class="c1" /></a></p> <p>And, just for my amusement, I dumped my entire dissertation in and got this:</p> <p><a href="http://wordle.net/gallery/wrdl/80700/Dissertation" title="Wordle: Dissertation"><img src="http://wordle.net/thumb/wrdl/80700/Dissertation" class="c1" /></a></p> Chris Lawrence http://blog.lordsutch.com/ Signifying Nothing Serious (and not-so-serious) commentary from Chris Lawrence. http://blog.lordsutch.com/feed/ 2008-07-22T04:00:29+00:00 Copyright © 2002–08 Chris Lawrence, Brock Sides, and Robert Prather. Package rgl updated to version 0.80 with previous version 0.79 dated 2008-06-03 http://dirk.eddelbuettel.com/cranberries/2008/07/21#rgl_0.80 2008-07-21T18:16:00+00:00 <p><strong>Author</strong>: Daniel Adler , Duncan Murdoch <br /> <strong>Title</strong>: 3D visualization device system (OpenGL) <br /> <strong>Description</strong>: 3D visualization device (OpenGL) <p> Diff between rgl versions 0.79 dated 2008-06-03 and 0.80 dated 2008-07-21 <pre> rgl-0.79/rgl/src/ext/ftgl/FTBBox.h |only rgl-0.79/rgl/src/ext/ftgl/FTBitmapGlyph.cpp |only rgl-0.79/rgl/src/ext/ftgl/FTBitmapGlyph.h |only rgl-0.79/rgl/src/ext/ftgl/FTExtrdGlyph.cpp |only rgl-0.79/rgl/src/ext/ftgl/FTExtrdGlyph.h |only rgl-0.79/rgl/src/ext/ftgl/FTFont.cpp |only rgl-0.79/rgl/src/ext/ftgl/FTFont.h |only rgl-0.79/rgl/src/ext/ftgl/FTGL.h |only rgl-0.79/rgl/src/ext/ftgl/FTGLBitmapFont.cpp |only rgl-0.79/rgl/src/ext/ftgl/FTGLBitmapFont.h |only rgl-0.79/rgl/src/ext/ftgl/FTGLExtrdFont.cpp |only rgl-0.79/rgl/src/ext/ftgl/FTGLExtrdFont.h |only rgl-0.79/rgl/src/ext/ftgl/FTGLOutlineFont.cpp |only rgl-0.79/rgl/src/ext/ftgl/FTGLOutlineFont.h |only rgl-0.79/rgl/src/ext/ftgl/FTGLPixmapFont.cpp |only rgl-0.79/rgl/src/ext/ftgl/FTGLPixmapFont.h |only rgl-0.79/rgl/src/ext/ftgl/FTGLPolygonFont.cpp |only rgl-0.79/rgl/src/ext/ftgl/FTGLPolygonFont.h |only rgl-0.79/rgl/src/ext/ftgl/FTGLTextureFont.cpp |only rgl-0.79/rgl/src/ext/ftgl/FTGLTextureFont.h |only rgl-0.79/rgl/src/ext/ftgl/FTGlyph.cpp |only rgl-0.79/rgl/src/ext/ftgl/FTGlyph.h |only rgl-0.79/rgl/src/ext/ftgl/FTOutlineGlyph.cpp |only rgl-0.79/rgl/src/ext/ftgl/FTOutlineGlyph.h |only rgl-0.79/rgl/src/ext/ftgl/FTPixmapGlyph.cpp |only rgl-0.79/rgl/src/ext/ftgl/FTPixmapGlyph.h |only rgl-0.79/rgl/src/ext/ftgl/FTPoint.h |only rgl-0.79/rgl/src/ext/ftgl/FTPolyGlyph.cpp |only rgl-0.79/rgl/src/ext/ftgl/FTPolyGlyph.h |only rgl-0.79/rgl/src/ext/ftgl/FTTextureGlyph.cpp |only rgl-0.79/rgl/src/ext/ftgl/FTTextureGlyph.h |only rgl-0.80/rgl/DESCRIPTION | 26 rgl-0.80/rgl/R/r3d.rgl.R | 4 rgl-0.80/rgl/configure | 4740 ++++++++++++---------- rgl-0.80/rgl/inst/NEWS | 4 rgl-0.80/rgl/man/texts.Rd | 3 rgl-0.80/rgl/src/BBoxDeco.cpp | 108 rgl-0.80/rgl/src/TextSet.hpp | 6 rgl-0.80/rgl/src/build/autoconf/config.guess | 60 rgl-0.80/rgl/src/build/autoconf/config.sub | 78 rgl-0.80/rgl/src/build/autoconf/install-sh | 678 ++- rgl-0.80/rgl/src/ext/ftgl/FTBuffer.cpp |only rgl-0.80/rgl/src/ext/ftgl/FTCharToGlyphIndexMap.h | 91 rgl-0.80/rgl/src/ext/ftgl/FTCharmap.cpp | 90 rgl-0.80/rgl/src/ext/ftgl/FTCharmap.h | 71 rgl-0.80/rgl/src/ext/ftgl/FTContour.cpp | 306 - rgl-0.80/rgl/src/ext/ftgl/FTContour.h | 155 rgl-0.80/rgl/src/ext/ftgl/FTFace.cpp | 177 rgl-0.80/rgl/src/ext/ftgl/FTFace.h | 72 rgl-0.80/rgl/src/ext/ftgl/FTFont |only rgl-0.80/rgl/src/ext/ftgl/FTGL |only rgl-0.80/rgl/src/ext/ftgl/FTGlyph |only rgl-0.80/rgl/src/ext/ftgl/FTGlyphContainer.cpp | 108 rgl-0.80/rgl/src/ext/ftgl/FTGlyphContainer.h | 66 rgl-0.80/rgl/src/ext/ftgl/FTInternals.h |only rgl-0.80/rgl/src/ext/ftgl/FTLayout |only rgl-0.80/rgl/src/ext/ftgl/FTLibrary.cpp | 51 rgl-0.80/rgl/src/ext/ftgl/FTLibrary.h | 55 rgl-0.80/rgl/src/ext/ftgl/FTList.h | 57 rgl-0.80/rgl/src/ext/ftgl/FTPoint.cpp | 51 rgl-0.80/rgl/src/ext/ftgl/FTSize.cpp | 71 rgl-0.80/rgl/src/ext/ftgl/FTSize.h | 58 rgl-0.80/rgl/src/ext/ftgl/FTUnicode.h |only rgl-0.80/rgl/src/ext/ftgl/FTVector.h | 147 rgl-0.80/rgl/src/ext/ftgl/FTVectoriser.cpp | 265 - rgl-0.80/rgl/src/ext/ftgl/FTVectoriser.h | 140 rgl-0.80/rgl/src/ext/ftgl/config.h |only rgl-0.80/rgl/src/ftgl.cpp | 24 rgl-0.80/rgl/src/glgui.cpp | 8 rgl-0.80/rgl/src/glgui.hpp | 4 70 files changed, 4798 insertions(+), 2976 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/rgl/index.html">More information about rgl at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 New package prodlim with initial version 1.0.5 http://dirk.eddelbuettel.com/cranberries/2008/07/21#prodlim_1.0.5 2008-07-21T18:16:00+00:00 <strong>Package</strong>: prodlim<br /> <strong>Title</strong>: Product Limit Estimation<br /> <strong>Version</strong>: 1.0.5<br /> <strong>Author</strong>: Thomas A. Gerds<br /> <strong>Description</strong>: Fast and user friendly nonparametric estimation in censored survival (event history) analysis.<br /> <strong>Depends</strong>: R (>= 1.9.1), KernSmooth, survival<br /> <strong>Maintainer</strong>: Thomas A. Gerds <br /> <strong>License</strong>: GPL2<br /> <strong>Packaged</strong>: Mon Jul 21 14:31:19 2008; tag<br /> <p> <a href="http://cran.r-project.org/web/packages/prodlim/index.html">More information about prodlim at CRAN</a></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package deSolve updated to version 1.2-1 with previous version 1.2 dated 2008-07-18 http://dirk.eddelbuettel.com/cranberries/2008/07/21#deSolve_1.2-1 2008-07-21T18:16:00+00:00 <p><strong>Author</strong>: Karline Soetaert , Thomas Petzoldt , R. Woodrow Setzer <br /> <strong>Title</strong>: General solvers for ordinary differential equations (ODE) and for differential algebraic equations (DAE) <br /> <strong>Description</strong>: Functions that solve a system of first-order ordinary differential equations (ODE) and of differential algebraic equations (DAE). The functions provide an interface to the FORTRAN functions lsoda, lsodar, lsode, lsodes, dvode and daspk. The package also contains routines designed for solving uni-and multicomponent 1-D and 2-D reactive transport models. <p> Diff between deSolve versions 1.2 dated 2008-07-18 and 1.2-1 dated 2008-07-21 <pre> DESCRIPTION | 4 inst/doc/compiledCode.Rnw | 26 inst/doc/compiledCode.pdf | 1549 ++++++++++++++++++++++++---------------------- 3 files changed, 840 insertions(+), 739 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/deSolve/index.html">More information about deSolve at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 tips:spatial-data:overlapping http://wiki.r-project.org/rwiki/doku.php?id=tips:spatial-data:overlapping&amp;do=diff1216640942 2008-07-21T12:49:02+00:00 Via Adrian Baddeley on R-sig-geo: library&#40;spatstat&#41; X &lt;- crossing.psp&#40;as.psp&#40;W&#41;, S&#41; X$n &gt; 0 # returns TRUE if the line segment crosses any of the edges of the # rectangle. The command as.psp(W) converts the edges of the... Bjarke Christensen bjarke.christensen@sydbank.dk http://wiki.r-project.org/rwiki/ R Wiki http://wiki.r-project.org/rwiki/feed.php 2008-07-25T07:30:53+00:00 Package pomp updated to version 0.20-4 with previous version 0.20-2 dated 2008-07-16 http://dirk.eddelbuettel.com/cranberries/2008/07/21#pomp_0.20-4 2008-07-21T10:16:00+00:00 <p><strong>Author</strong>: Aaron A. King, Edward L. Ionides, Carles Martinez Breto <br /> <strong>Title</strong>: Partially-observed Markov processes <br /> <strong>Description</strong>: Inference methods for partially-observed Markov processes <p> Diff between pomp versions 0.20-2 dated 2008-07-16 and 0.20-4 dated 2008-07-21 <pre> DESCRIPTION | 6 R/aaa.R | 1 R/init.state-pomp.R | 6 R/pomp.R | 9 - data/ou2.rda |binary inst/ChangeLog | 266 +++++++++++++++++++++++-------------- inst/NEWS | 74 ++++++---- inst/doc/compiled_code_in_pomp.Rnw | 2 inst/doc/compiled_code_in_pomp.pdf |binary inst/doc/intro_to_pomp.Rnw | 34 +--- inst/doc/intro_to_pomp.pdf |binary inst/examples/logistic.R |only inst/examples/rw2.R |only inst/examples/sir.c | 4 inst/include/pomp.h | 9 - man/dprocess-pomp.Rd | 88 ++++++------ man/mif-class.Rd | 2 man/ou2.Rd | 1 man/pomp-class.Rd | 4 man/pomp.Rd | 8 - man/rmeasure-pomp.Rd | 6 src/dmeasure.c | 17 -- src/dprocess.c | 28 ++- src/euler.c | 156 +++++++++++++++------ src/eulermultinom.c | 2 src/initstate.c | 42 +++++ src/lookup_table.c | 26 +-- src/ou2.c | 14 - src/pomp.h | 9 - src/pomp_internal.h | 3 src/rmeasure.c | 65 ++++++--- src/rprocess.c | 28 ++- src/sir.c | 4 tests/logistic.R |only tests/logistic.Rout.save |only tests/sir.R | 32 ++-- tests/sir.Rout.save | 76 +++++----- 37 files changed, 613 insertions(+), 409 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/pomp/index.html">More information about pomp at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package compare updated to version 0.2 with previous version 0.1 dated 2008-06-16 http://dirk.eddelbuettel.com/cranberries/2008/07/21#compare_0.2 2008-07-21T10:16:00+00:00 <p><strong>Author</strong>: Paul Murrell <br /> <strong>Title</strong>: Comparing Objects for Differences <br /> <strong>Description</strong>: Functions for comparing vectors and data frames. <p> Diff between compare versions 0.1 dated 2008-06-16 and 0.2 dated 2008-07-21 <pre> DESCRIPTION | 6 NAMESPACE | 5 R/file.R | 9 + R/same.R | 278 +++++++++++++++++++++++++++++++++------------ inst/doc/compare-intro.Rnw | 2 inst/doc/compare-intro.pdf |binary inst/doc/compare.tex | 84 ++++++++----- inst/doc/fundamentals.pdf |binary man/compareEqual.Rd | 7 - man/compareFile.Rd | 8 + tests/test.R | 105 ++++++++++++++++ 11 files changed, 397 insertions(+), 107 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/compare/index.html">More information about compare at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package R.matlab updated to version 1.2.3 with previous version 1.2.2 dated 2008-07-18 http://dirk.eddelbuettel.com/cranberries/2008/07/21#R.matlab_1.2.3 2008-07-21T10:16:00+00:00 <p><strong>Author</strong>: Henrik Bengtsson , Jason Riedy <br /> <strong>Title</strong>: Read and write of MAT files together with R-to-Matlab connectivity <br /> <strong>Description</strong>: This package provides methods to read and write MAT files. It also makes it possible to communicate (evaluate code, send and retrieve objects etc.) with Matlab v6 or higher running locally or on a remote host. <p> Diff between R.matlab versions 1.2.2 dated 2008-07-18 and 1.2.3 dated 2008-07-21 <pre> R.matlab-1.2.2/R.matlab/inst/mat-files/StructWithSparseMatrix-v4.mat |only R.matlab-1.2.3/R.matlab/DESCRIPTION | 6 +- R.matlab-1.2.3/R.matlab/R/readMat.R | 2 R.matlab-1.2.3/R.matlab/incl/readMat.Rex | 26 ++++++---- R.matlab-1.2.3/R.matlab/inst/NEWS | 5 + R.matlab-1.2.3/R.matlab/inst/mat-files/StructWithSparseMatrix-v4,compressed.mat |only R.matlab-1.2.3/R.matlab/man/Matlab.Rd | 2 R.matlab-1.2.3/R.matlab/man/R.matlab-package.Rd | 2 R.matlab-1.2.3/R.matlab/man/readMat.Rd | 26 ++++++---- R.matlab-1.2.3/R.matlab/man/writeMat.Rd | 17 ++++++ 10 files changed, 63 insertions(+), 23 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/R.matlab/index.html">More information about R.matlab at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package MatchIt updated to version 2.4-5 with previous version 2.4-4 dated 2008-07-20 http://dirk.eddelbuettel.com/cranberries/2008/07/21#MatchIt_2.4-5 2008-07-21T10:16:00+00:00 <p><strong>Author</strong>: Daniel Ho , Elizabeth Stuart , Kosuke Imai , Gary King <br /> <strong>Title</strong>: MatchIt <br /> <strong>Description</strong>: MatchIt preprocesses data by selecting approximate matched samples of the treated and control groups with similar covariate distributions, drawing on a large variety of matching methods. After preprocessing data with MatchIt, whatever standard parametric technique one might have used without preprocessing can be used, but the results will be far less model dependent. <p> Diff between MatchIt versions 2.4-4 dated 2008-07-20 and 2.4-5 dated 2008-07-21 <pre> DESCRIPTION | 6 R/matchit.R | 2 inst/doc/index.shtml | 2 inst/doc/matchit.log | 4 inst/doc/matchit.pdf | 1970 +++++++++++++++++++++++++-------------------------- inst/doc/matchit.tex | 1 6 files changed, 992 insertions(+), 993 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/MatchIt/index.html">More information about MatchIt at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 tips:spatial-data:distances http://wiki.r-project.org/rwiki/doku.php?id=tips:spatial-data:distances&amp;do=diff1216631710 2008-07-21T10:15:10+00:00 The function spDistsN1() from the maptools package returns a vector of distances between a matrix of 2D points and a single 2D point, using Euclidean or Great Circle distance (WGS84 ellipsoid) methods. An example: library(maptools) data(meuse) coor... Bjarke Christensen bjarke.christensen@sydbank.dk http://wiki.r-project.org/rwiki/ R Wiki http://wiki.r-project.org/rwiki/feed.php 2008-07-25T07:30:53+00:00 There is a time for flip-flopping tag:blog.lordsutch.com,2008-07-21:4105 2008-07-21T01:42:45+00:00 <p>If the Iraqi prime minister <a href="http://www.poliblogger.com/?p=13933" title="PoliBlog (TM): A Rough Draft of my Thoughts &raquo; Chuck Todd Summarizes Me">thinks we should go, we should go</a>. If McCain has any sense (admittedly, not something in evidence so far in his campaign&rsquo;s response to the Maliki remarks), he&rsquo;ll pivot to underbid Obama, <cite>Name That Tune</cite> style: &ldquo;16 months? I&rsquo;ll do it in 8!&rdquo;</p> <p>Mind you, I&rsquo;ve already predicted that the net effect, blogospheric bloviation aside, of McCain and Obama&rsquo;s positions on leaving Iraq on the actual date of departure is on the order of milliseconds, so I really don&rsquo;t care that much what domestic political games the Iraqi government wants to play to shore up Sunni-Shiite cooperation in parliament.</p> Chris Lawrence http://blog.lordsutch.com/ Signifying Nothing Serious (and not-so-serious) commentary from Chris Lawrence. http://blog.lordsutch.com/feed/ 2008-07-22T04:00:29+00:00 Copyright © 2002–08 Chris Lawrence, Brock Sides, and Robert Prather. tips:graphics-misc:ggplot2theme_inbase http://wiki.r-project.org/rwiki/doku.php?id=tips:graphics-misc:ggplot2theme_inbase&amp;do=diff1216589157 2008-07-20T22:25:57+00:00 This possibly pointless exercise aims at reproducing the default theme of ggplot2 graphs with base graphics. It could be useful to obtain a consistent style in a document comprising both types of graphs. library&#40;ggplot2&#41; &nbsp; graphics.off... baptiste ba208@ex.ac.uk http://wiki.r-project.org/rwiki/ R Wiki http://wiki.r-project.org/rwiki/feed.php 2008-07-25T07:30:53+00:00 Package phangorn updated to version 0.0-2 with previous version 0.0-1 dated 2008-03-25 http://dirk.eddelbuettel.com/cranberries/2008/07/20#phangorn_0.0-2 2008-07-20T18:16:00+00:00 <p><strong>Author</strong>: Klaus Schliep <br /> <strong>Title</strong>: Phylogenetic analysis in R <br /> <strong>Description</strong>: Phylogenetic analysis in R (Estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, Distance methods &amp; Hadamard conjugation) <p> Diff between phangorn versions 0.0-1 dated 2008-03-25 and 0.0-2 dated 2008-07-20 <pre> phangorn-0.0-1/phangorn/man/phangorn-internal.Rd |only phangorn-0.0-2/phangorn/Changes |only phangorn-0.0-2/phangorn/DESCRIPTION | 8 phangorn-0.0-2/phangorn/NAMESPACE |only phangorn-0.0-2/phangorn/R/phylo.R | 4270 ++++++++++++----------- phangorn-0.0-2/phangorn/man/NJ.Rd | 6 phangorn-0.0-2/phangorn/man/dist.hamming.Rd |only phangorn-0.0-2/phangorn/man/hadamard.Rd | 2 phangorn-0.0-2/phangorn/man/parsimony.Rd | 2 phangorn-0.0-2/phangorn/man/phyDat.Rd | 3 phangorn-0.0-2/phangorn/man/pml.Rd | 79 phangorn-0.0-2/phangorn/man/treedist.Rd | 2 phangorn-0.0-2/phangorn/man/upgma.Rd | 2 phangorn-0.0-2/phangorn/src/init.c |only phangorn-0.0-2/phangorn/src/phangorn.c | 240 + phangorn-0.0-2/phangorn/src/phangorn.h |only 16 files changed, 2507 insertions(+), 2107 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/phangorn/index.html">More information about phangorn at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package laercio updated to version 0.9-5 with previous version 0.9-4 dated 2008-07-15 http://dirk.eddelbuettel.com/cranberries/2008/07/20#laercio_0.9-5 2008-07-20T18:16:00+00:00 <p><strong>Author</strong>: Laercio Junio da Silva <br /> <strong>Title</strong>: Duncan test, Tukey test and Scott-Knott test. <br /> <strong>Description</strong>: The package contains functions to compare and group means. <p> Diff between laercio versions 0.9-4 dated 2008-07-15 and 0.9-5 dated 2008-07-20 <pre> DESCRIPTION | 6 +++--- R/LScottKnott.aov.r | 24 ++++++++++++++---------- man/laercio-package.Rd | 4 ++-- 3 files changed, 19 insertions(+), 15 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/laercio/index.html">More information about laercio at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package kknn updated to version 1.0-6 with previous version 1.0-5 dated 2007-10-11 http://dirk.eddelbuettel.com/cranberries/2008/07/20#kknn_1.0-6 2008-07-20T18:16:00+00:00 <p><strong>Author</strong>: Klaus Schliep &amp; Klaus Hechenbichler <br /> <strong>Title</strong>: Weighted k-Nearest Neighbors <br /> <strong>Description</strong>: Weighted k-Nearest Neighbors Classification and Regression <p> Diff between kknn versions 1.0-5 dated 2007-10-11 and 1.0-6 dated 2008-07-20 <pre> DESCRIPTION | 8 INDEX | 16 R/kknn.R | 1060 +++++++++++++++++++++++++++++------------------------------- 3 files changed, 535 insertions(+), 549 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/kknn/index.html">More information about kknn at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package gWidgetstcltk updated to version 0.0-13 with previous version 0.0-11 dated 2008-07-20 http://dirk.eddelbuettel.com/cranberries/2008/07/20#gWidgetstcltk_0.0-13 2008-07-20T18:16:00+00:00 <p><strong>Author</strong>: John Verzani <br /> <strong>Title</strong>: Toolkit implementation of gWidgets for tcltk package <br /> <strong>Description</strong>: Port of gWidgets API to the tcltk package. Requires TK 8.5 or greater for the tile (ttk)widgets http://www.tcl.tk/software/tcltk/8.5.tml. This is default on Windows. Under linux, it must be installed. Under Mac OS X (10.5) it must be upgraded. See www.tcl.tk to download source. Under the Mac it compiles and installs cleanly. <p> Diff between gWidgetstcltk versions 0.0-11 dated 2008-07-20 and 0.0-13 dated 2008-07-20 <pre> DESCRIPTION | 4 ++-- NEWS | 6 ++++++ R/zzz.R | 6 ++++++ tests/RunTests.R | 18 +++++++++++------- 4 files changed, 25 insertions(+), 9 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/gWidgetstcltk/index.html">More information about gWidgetstcltk at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package eRm updated to version 0.10-1 with previous version 0.9-8.2 dated 2008-05-25 http://dirk.eddelbuettel.com/cranberries/2008/07/20#eRm_0.10-1 2008-07-20T18:16:00+00:00 <p><strong>Author</strong>: Patrick Mair, Reinhold Hatzinger <br /> <strong>Title</strong>: Extended Rasch Modeling. <br /> <strong>Description</strong>: eRm fits Rasch models (RM), linear logistic test models (LLTM), rating scale model (RSM), linear rating scale models (LRSM), partial credit models (PCM), and linear partial credit models (LPCM). Missing values are allowed in the data matrix. Additional features are the ML estimation of the person parameters, Andersen's LR-test, item-specific Wald test, itemfit and personfit statistics including infit and outfit measures, various ICC and related plots, automated stepwise item elimination, simulation module for various binary data matrices. An eRm platform is provided at R-forge (see URL). <p> Diff between eRm versions 0.9-8.2 dated 2008-05-25 and 0.10-1 dated 2008-07-20 <pre> DESCRIPTION | 11 ++++--- NAMESPACE | 9 ++++++ R/IC.ppar.r | 67 +++++++++++++++++++++++++++++++++++++---------- R/Rsquared.R |only R/Waldtest.Rm.R | 30 ++------------------- R/cldeviance.R |only R/cwdeviance.r |only R/gofIRT.R |only R/gofIRT.ppar.R |only R/hoslem.R |only R/itemfit.ppar.R | 11 ------- R/logLik.ppar.r | 4 +- R/person.parameter.eRm.R | 30 +-------------------- R/pifit.internal.r | 4 +- R/pmat.ppar.R | 13 +++------ R/predict.ppar.R |only R/print.ICr.r | 6 +--- R/print.gof.R |only R/print.step.r |only R/rostdeviance.r |only R/stepwiseIt.R |only R/stepwiseIt.eRm.R |only R/summary.eRm.R | 2 - R/summary.gof.R |only inst/doc/eRmvig.pdf |binary man/IC.Rd |only man/eRm-package.Rd | 4 +- man/gofIRT.Rd |only man/itemfit.ppar.Rd | 6 ++-- man/person.parameter.Rd | 7 ---- man/predict.ppar.Rd |only man/stepwiseIt.Rd |only 32 files changed, 93 insertions(+), 111 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/eRm/index.html">More information about eRm at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package gWidgetstcltk updated to version 0.0-11 with previous version 0.0-9 dated 2008-05-06 http://dirk.eddelbuettel.com/cranberries/2008/07/20#gWidgetstcltk_0.0-11 2008-07-20T14:16:00+00:00 <p><strong>Author</strong>: John Verzani <br /> <strong>Title</strong>: Toolkit implementation of gWidgets for tcltk package <br /> <strong>Description</strong>: Port of gWidgets API to the tcltk package. Requires TK 8.5 or greater for the tile (ttk)widgets http://www.tcl.tk/software/tcltk/8.5.tml. This is default on Windows. Under linux, it must be installed. Under Mac OS X (10.5) it must be upgraded. See www.tcl.tk to download source. Under the Mac it compiles and installs cleanly. <p> Diff between gWidgetstcltk versions 0.0-9 dated 2008-05-06 and 0.0-11 dated 2008-07-20 <pre> DESCRIPTION | 10 +++++----- NEWS | 12 ++++++++++++ R/gframe.R | 2 +- man/gWidgetstcltk-undocumented.Rd | 33 +++++++++++++++++++++++++++++++-- 4 files changed, 49 insertions(+), 8 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/gWidgetstcltk/index.html">More information about gWidgetstcltk at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package gWidgetsrJava updated to version 0.0-13 with previous version 0.0-12 dated 2008-06-11 http://dirk.eddelbuettel.com/cranberries/2008/07/20#gWidgetsrJava_0.0-13 2008-07-20T14:16:00+00:00 <p><strong>Author</strong>: John Verzani <br /> <strong>Title</strong>: Toolkit implementation of gWidgets for rJava <br /> <strong>Description</strong>: Port of gWidgets API to the rJava interface between R and Java. <p> Diff between gWidgetsrJava versions 0.0-12 dated 2008-06-11 and 0.0-13 dated 2008-07-20 <pre> DESCRIPTION | 4 ++-- man/gWidgetsrJava-undocumented.Rd | 1 + 2 files changed, 3 insertions(+), 2 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/gWidgetsrJava/index.html">More information about gWidgetsrJava at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package gWidgetsRGtk2 updated to version 0.0-36 with previous version 0.0-35 dated 2008-06-11 http://dirk.eddelbuettel.com/cranberries/2008/07/20#gWidgetsRGtk2_0.0-36 2008-07-20T14:16:00+00:00 <p><strong>Author</strong>: Michael Lawrence, John Verzani <br /> <strong>Title</strong>: Toolkit implementation of gWidgets for RGtk2 <br /> <strong>Description</strong>: Port of gWidgets API to RGtk2 <p> Diff between gWidgetsRGtk2 versions 0.0-35 dated 2008-06-11 and 0.0-36 dated 2008-07-20 <pre> ChangeLog | 13 +++++++++++++ DESCRIPTION | 4 ++-- NEWS | 6 ++++++ R/gpanedgroup.R | 2 +- R/gradio.R | 13 +++++++++++++ R/gtoolbar.R | 2 +- R/gvarbrowser.R | 8 +++++++- man/gWidgetsRGtk2-undocumented.Rd | 4 +++- 8 files changed, 46 insertions(+), 6 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/gWidgetsRGtk2/index.html">More information about gWidgetsRGtk2 at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 New package sensR with initial version 1.0.0 http://dirk.eddelbuettel.com/cranberries/2008/07/20#sensR_1.0.0 2008-07-20T10:16:00+00:00 <strong>Package</strong>: sensR<br /> <strong>Type</strong>: Package<br /> <strong>Title</strong>: Thurstonian models for sensory discrimination<br /> <strong>Version</strong>: 1.0.0<br /> <strong>Date</strong>: 2008-05-07<br /> <strong>Author</strong>: Rune Haubo B Christensen and Per Bruun Brockhoff<br /> <strong>Maintainer</strong>: Rune Haubo B Christensen <br /> <strong>Suggests</strong>: MASS<br /> <strong>Description</strong>: Provides methods for sensory discrimination<br /> <strong>methods</strong>: duotrio, triangle, 2-AFC and 3-AFC. This enables the calculation of d-primes, variances for d-primes and comparisons of different d-primes.<br /> <strong>License</strong>: GPL-2 | GPL-3<br /> <strong>Packaged</strong>: Fri Jul 18 21:28:59 2008; rhbc<br /> <p> <a href="http://cran.r-project.org/web/packages/sensR/index.html">More information about sensR at CRAN</a></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package qtl updated to version 1.09-43 with previous version 1.08-56 dated 2008-04-09 http://dirk.eddelbuettel.com/cranberries/2008/07/20#qtl_1.09-43 2008-07-20T10:16:00+00:00 <p><strong>Author</strong>: Karl W Broman and Hao Wu, with ideas from Gary Churchill and Saunak Sen and contributions from Brian Yandell <br /> <strong>Title</strong>: Tools for analyzing QTL experiments <br /> <strong>Description</strong>: Analysis of experimental crosses to identify genes (called quantitative trait loci, QTLs) contributing to variation in quantitative traits. <p> Diff between qtl versions 1.08-56 dated 2008-04-09 and 1.09-43 dated 2008-07-20 <pre> DESCRIPTION | 6 - INDEX | 4 R/add_threshold.R | 12 +- R/addqtl.R | 95 ++++++++++++++--- R/argmax.geno.R | 6 - R/calc.genoprob.R | 8 - R/calc.pairprob.R | 6 - R/cim.R | 7 + R/countXO.R | 4 R/effectplot.R | 123 ++++++++++++++-------- R/effectscan.R | 4 R/errorlod.R | 10 - R/est.map.R | 4 R/est.rf.R | 21 ++- R/fitqtl.R | 110 ++++++++++++++++++-- R/makeqtl.R | 99 ++++++++++++++++-- R/plot.R | 70 +++++++++---- R/plot.scanone.R | 63 ++++++++--- R/plot.scantwo.R | 50 ++++++--- R/plotModel.R |only R/read.cross.R | 18 ++- R/read.cross.csv.R | 19 ++- R/read.cross.csvs.R | 22 ++-- R/read.cross.mm.R | 10 - R/read.cross.qtx.R | 12 +- R/refineqtl.R | 84 ++++++++++++--- R/ripple.R | 6 - R/scanone.R | 18 ++- R/scanoneboot.R | 7 + R/scanqtl.R | 26 +++- R/scantwo.R | 19 ++- R/sim.geno.R | 6 - R/stepwiseqtl.R |only R/summary.cross.R | 90 +++++++++++++--- R/summary.scanone.R | 29 ++++- R/summary.scantwo.R | 30 ++++- R/summary.scantwo.old.R | 6 - R/tryallpositions.R | 6 - R/util.R | 133 ++++++++++++++++++++---- R/write.cross.R | 8 - R/xchr.R | 8 - inst/BUGS.txt | 13 ++ inst/README.txt | 18 +-- inst/STATUS.txt | 185 ++++++++++++++++++++++++++++++++++ inst/TODO.txt | 67 ++++++------ inst/docs/new_multiqtl.Rnw | 242 +++++++++++++++++++++++++++++++++++++-------- inst/docs/new_multiqtl.pdf |binary inst/docs/rqtltour.R | 11 +- inst/docs/rqtltour.pdf |binary inst/docs/rqtltour.tex | 97 +++++++++++++++--- man/addint.Rd | 16 ++ man/addpair.Rd | 13 +- man/addqtl.Rd | 13 +- man/arithscan.Rd | 4 man/arithscanperm.Rd | 4 man/bayesint.Rd | 19 ++- man/c.scanone.Rd | 2 man/calc.penalties.Rd |only man/cim.Rd | 6 - man/effectplot.Rd | 12 +- man/fake.bc.Rd | 6 - man/fitqtl.Rd | 27 ++--- man/geno.image.Rd | 2 man/lodint.Rd | 19 ++- man/nmissing.Rd | 2 man/ntyped.Rd |only man/plot.missing.Rd | 2 man/plot.pheno.Rd | 6 - man/plot.pxg.Rd | 6 - man/plot.rf.Rd | 3 man/plotModel.Rd |only man/qtl-internal.Rd | 26 ++++ man/refineqtl.Rd | 22 +++- man/reorderqtl.Rd | 8 + man/scanone.Rd | 35 ++++-- man/scanoneboot.Rd | 6 - man/scanqtl.Rd | 12 +- man/scantwo.Rd | 22 ++-- man/stepwiseqtl.Rd |only man/subset.cross.Rd | 2 man/summary.fitqtl.Rd | 5 man/summary.scantwo.Rd | 2 src/fitqtl_hk.c | 4 src/hmm_4way.c | 6 - src/hmm_bc.c | 6 - src/hmm_main.c | 2 86 files changed, 1719 insertions(+), 493 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/qtl/index.html">More information about qtl at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package picante updated to version 0.3-0 with previous version 0.2-0 dated 2008-06-18 http://dirk.eddelbuettel.com/cranberries/2008/07/20#picante_0.3-0 2008-07-20T10:16:00+00:00 <p><strong>Author</strong>: Steve Kembel , David Ackerly , Simon Blomberg , Peter Cowan , Matthew Helmus , Cam Webb <br /> <strong>Title</strong>: Tools for integrating phylogenies and ecology <br /> <strong>Description</strong>: Phylocom integration, community analyses, null-models, traits and evolution in R <p> Diff between picante versions 0.2-0 dated 2008-06-18 and 0.3-0 dated 2008-07-20 <pre> DESCRIPTION | 8 ++++---- R/evolve.trait.R | 4 +++- R/pblm.R |only R/phylodiversity.R | 11 +++++++++-- R/phylostruct.R |only R/pic.circular.R | 2 +- R/specaccum.psr.R | 4 ++-- R/sppregs.R |only man/pblm.Rd |only man/phylostruct.Rd |only man/sppregs.Rd |only 11 files changed, 19 insertions(+), 10 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/picante/index.html">More information about picante at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package monomvn updated to version 1.4 with previous version 1.3-1 dated 2008-06-20 http://dirk.eddelbuettel.com/cranberries/2008/07/20#monomvn_1.4 2008-07-20T10:16:00+00:00 <p><strong>Author</strong>: Robert B. Gramacy <br /> <strong>Title</strong>: Estimation for multivariate normal data with monotone missingness <br /> <strong>Description</strong>: Estimation of multivariate normal data of arbitrary dimension where the pattern of missing data is monotone. Through the use of parsimonious/shrinkage regressions (plsr, pcr, lasso, ridge, etc.), where standard regressions fail, the package can handle an (almost) arbitrary amount of missing data. The current version supports maximum likelihood inference and beta implementation of a Bayesian version employing a Bayesian lasso. A fully functional standalone (beta) interface to the Bayesian lasso (from Park &amp; Casella) and ridge regression with model selection via Reversible Jump is also provided <p> Diff between monomvn versions 1.3-1 dated 2008-06-20 and 1.4 dated 2008-07-20 <pre> monomvn-1.3-1/monomvn/man/kl.norm.Rd |only monomvn-1.4/monomvn/.Rbuildindex.78724 |only monomvn-1.4/monomvn/ChangeLog | 51 + monomvn-1.4/monomvn/DESCRIPTION | 13 monomvn-1.4/monomvn/R/blasso.R | 109 ++- monomvn-1.4/monomvn/R/blasso.s3.R | 15 monomvn-1.4/monomvn/R/bmonomvn.R | 143 ++++- monomvn-1.4/monomvn/R/kl.norm.R | 88 ++- monomvn-1.4/monomvn/R/monomvn.R | 10 monomvn-1.4/monomvn/R/monomvn.s3.R | 4 monomvn-1.4/monomvn/R/posdef.approx.R | 50 + monomvn-1.4/monomvn/R/randmvn.R | 62 +- monomvn-1.4/monomvn/R/regress.R | 18 monomvn-1.4/monomvn/R/regress.lars.R | 30 - monomvn-1.4/monomvn/R/regress.ridge.R | 73 +- monomvn-1.4/monomvn/man/blasso.Rd | 143 ++--- monomvn-1.4/monomvn/man/blasso.s3.Rd | 16 monomvn-1.4/monomvn/man/bmonomvn.Rd | 164 +++-- monomvn-1.4/monomvn/man/cement.Rd | 2 monomvn-1.4/monomvn/man/metrics.Rd |only monomvn-1.4/monomvn/man/monomvn-internal.Rd | 2 monomvn-1.4/monomvn/man/monomvn-package.Rd | 18 monomvn-1.4/monomvn/man/monomvn.Rd | 88 +-- monomvn-1.4/monomvn/man/monomvn.s3.Rd | 6 monomvn-1.4/monomvn/man/posdef.approx.Rd | 15 monomvn-1.4/monomvn/man/randmvn.Rd | 34 + monomvn-1.4/monomvn/man/regress.Rd | 35 - monomvn-1.4/monomvn/man/rmono.Rd | 20 monomvn-1.4/monomvn/man/rwish.Rd | 2 monomvn-1.4/monomvn/src/blasso.cc | 798 ++++++++++++++++++---------- monomvn-1.4/monomvn/src/blasso.h | 71 +- monomvn-1.4/monomvn/src/bmonomvn.cc | 148 +++-- monomvn-1.4/monomvn/src/bmonomvn.h | 20 monomvn-1.4/monomvn/src/matrix.c | 25 monomvn-1.4/monomvn/src/matrix.h | 2 35 files changed, 1571 insertions(+), 704 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/monomvn/index.html">More information about monomvn at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package lga updated to version 1.1-1 with previous version 1.1-0 dated 2008-02-24 http://dirk.eddelbuettel.com/cranberries/2008/07/20#lga_1.1-1 2008-07-20T10:16:00+00:00 <p><strong>Author</strong>: Justin Harrington <br /> <strong>Title</strong>: Tools for linear grouping analysis (LGA) <br /> <strong>Description</strong>: Tools for linear grouping analysis. Three user-level functions: gap, rlga and lga. <p> Diff between lga versions 1.1-0 dated 2008-02-24 and 1.1-1 dated 2008-07-20 <pre> ChangeLog | 10 ++++ DESCRIPTION | 6 +- R/lga.R | 116 +++++++++++++++++++++++++++++-------------------- R/rlga.R | 69 ++++++++++++++++++++--------- data/corridorWalls.rda |only man/corridorWalls.Rd |only man/lga-package.Rd | 6 ++ man/lga.Rd | 23 +++++++-- 8 files changed, 155 insertions(+), 75 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/lga/index.html">More information about lga at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package hapassoc updated to version 1.2 with previous version 1.1-1 dated 2007-09-23 http://dirk.eddelbuettel.com/cranberries/2008/07/20#hapassoc_1.2 2008-07-20T10:16:00+00:00 <p><strong>Author</strong>: K. Burkett , B. McNeney , J. Graham , with code for case-control data contributed by Zhijian Chen <br /> <strong>Title</strong>: Inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm <br /> <strong>Description</strong>: The following R functions are used for inference of trait associations with haplotypes and other covariates in generalized linear models. The functions are developed primarily for data collected in cohort or cross-sectional studies. They can accommodate uncertain haplotype phase and handle missing genotypes at some SNPs. <p> Diff between hapassoc versions 1.1-1 dated 2007-09-23 and 1.2 dated 2008-07-20 <pre> DESCRIPTION | 12 R/hapassoc.R | 269 ++++++++++++- R/logLik_hapassoc.R | 8 R/summaryHap.R | 6 inst/doc/hapassoc.pdf | 964 ++++++++++++++++++++++++------------------------- man/PreHap.Rd | 2 man/anova_hapassoc.Rd | 3 man/hapassoc.Rd | 63 ++- man/logLik_hapassoc.Rd | 6 src/tapply_sum.c |only 10 files changed, 794 insertions(+), 539 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/hapassoc/index.html">More information about hapassoc at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 New package gWidgetsWWW with initial version 0.0-1 http://dirk.eddelbuettel.com/cranberries/2008/07/20#gWidgetsWWW_0.0-1 2008-07-20T10:16:00+00:00 <strong>Package</strong>: gWidgetsWWW<br /> <strong>Version</strong>: 0.0-1<br /> <strong>Title</strong>: Toolkit implementation of gWidgets for www<br /> <strong>Author</strong>: John Verzani<br /> <strong>Maintainer</strong>: John Verzani <br /> <strong>Depends</strong>: methods, proto, Rpad<br /> <strong>Suggests</strong>: <br /> <strong>Extends</strong>: <br /> <strong>Description</strong>: Port of gWidgets API to www using Rpad to link R with a web page and Ext to create widgets.<br /> <strong>License</strong>: GPL (>= 2)<br /> <strong>URL</strong>: http://www.math.csi.cuny.edu/pmg<br /> <strong>LazyLoad</strong>: FALSE<br /> <strong>Packaged</strong>: Fri Jul 18 11:06:15 2008; verzani<br /> <p> <a href="http://cran.r-project.org/web/packages/gWidgetsWWW/index.html">More information about gWidgetsWWW at CRAN</a></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package fingerprint updated to version 2.8 with previous version 2.7 dated 2007-11-09 http://dirk.eddelbuettel.com/cranberries/2008/07/20#fingerprint_2.8 2008-07-20T10:16:00+00:00 <p><strong>Author</strong>: Rajarshi Guha <br /> <strong>Title</strong>: Functions to operate on binary fingerprint data <br /> <strong>Description</strong>: This package contains functions to manipulate binary fingerprints of arbitrary length. A fingerprint is represented by an object of S4 class 'fingerprint' which is internally represented a vector of integers, such that each element represents the position in the fingerprint that is set to 1. The bitwise logical functions in R are overridden so that they can be used directly with 'fingerprint' objects. A number of distance metrics are also available (many contributed by Michael Fadock). Fingerprints can be converted to Euclidean vectors (i.e., points on the unit hypersphere) and can also be folded using OR. Arbitrary fingerprint formats can be handled via line handlers. Currently handlers are provided for CDK, MOE and BCI fingerprint data. <p> Diff between fingerprint versions 2.7 dated 2007-11-09 and 2.8 dated 2008-07-20 <pre> DESCRIPTION | 8 ++++---- R/misc.R | 2 +- man/fold.Rd | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/fingerprint/index.html">More information about fingerprint at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package eha updated to version 1.2-0 with previous version 1.0 dated 2007-10-07 http://dirk.eddelbuettel.com/cranberries/2008/07/20#eha_1.2-0 2008-07-20T10:16:00+00:00 <p><strong>Author</strong>: Göran Broström <br /> <strong>Title</strong>: Event History Analysis <br /> <strong>Description</strong>: A package for survival and event history analysis <p> Diff between eha versions 1.0 dated 2007-10-07 and 1.2-0 dated 2008-07-20 <pre> eha-1.0/eha/R/hweibull.R |only eha-1.0/eha/ToDo |only eha-1.2-0/eha/ChangeLog | 12 ++++ eha-1.2-0/eha/DESCRIPTION | 6 +- eha-1.2-0/eha/INDEX | 20 ++++++ eha-1.2-0/eha/NAMESPACE | 29 +++++++--- eha-1.2-0/eha/R/Extreme_Value.R |only eha-1.2-0/eha/R/Gompertz.R |only eha-1.2-0/eha/R/Loglogistic.R |only eha-1.2-0/eha/R/Lognormal.R |only eha-1.2-0/eha/R/Makeham.R |only eha-1.2-0/eha/R/Weibull.R |only eha-1.2-0/eha/R/aftreg.R |only eha-1.2-0/eha/R/aftreg.fit.R |only eha-1.2-0/eha/R/check.dist.R |only eha-1.2-0/eha/R/coxreg.R | 64 +++++++++++----------- eha-1.2-0/eha/R/coxreg.fit.R | 104 +++++++++++++++++++++--------------- eha-1.2-0/eha/R/mlreg.R | 38 ++++++------- eha-1.2-0/eha/R/phfunc.R |only eha-1.2-0/eha/R/phreg.R |only eha-1.2-0/eha/R/phreg.fit.R |only eha-1.2-0/eha/R/plot.aftreg.R |only eha-1.2-0/eha/R/plot.coxreg.R |only eha-1.2-0/eha/R/plot.hazdata.R |only eha-1.2-0/eha/R/plot.phreg.R |only eha-1.2-0/eha/R/plot.surv.R | 46 +++++++-------- eha-1.2-0/eha/R/plot.weibreg.R | 25 ++++---- eha-1.2-0/eha/R/print.aftreg.R |only eha-1.2-0/eha/R/print.phreg.R |only eha-1.2-0/eha/R/toBinary.R | 3 - eha-1.2-0/eha/R/wfunk.R | 34 ++++++----- eha-1.2-0/eha/data |only eha-1.2-0/eha/inst |only eha-1.2-0/eha/man/EV.Rd |only eha-1.2-0/eha/man/Gompertz.Rd |only eha-1.2-0/eha/man/Loglogistic.Rd |only eha-1.2-0/eha/man/Lognormal.Rd |only eha-1.2-0/eha/man/Makeham.Rd |only eha-1.2-0/eha/man/aftreg.Rd |only eha-1.2-0/eha/man/aftreg.fit.Rd |only eha-1.2-0/eha/man/check.dist.Rd |only eha-1.2-0/eha/man/check.surv.Rd | 4 - eha-1.2-0/eha/man/coxreg.Rd | 7 ++ eha-1.2-0/eha/man/coxreg.fit.Rd | 4 + eha-1.2-0/eha/man/geome.fit.Rd | 4 - eha-1.2-0/eha/man/male.mortality.Rd |only eha-1.2-0/eha/man/mlreg.Rd | 14 +++- eha-1.2-0/eha/man/perstat.Rd | 4 - eha-1.2-0/eha/man/phfunc.Rd |only eha-1.2-0/eha/man/phreg.Rd |only eha-1.2-0/eha/man/phreg.fit.Rd |only eha-1.2-0/eha/man/plot.aftreg.Rd |only eha-1.2-0/eha/man/plot.coxreg.Rd |only eha-1.2-0/eha/man/plot.hazdata.Rd |only eha-1.2-0/eha/man/plot.phreg.Rd |only eha-1.2-0/eha/man/plot.weibreg.Rd | 4 - eha-1.2-0/eha/man/print.aftreg.Rd |only eha-1.2-0/eha/man/print.phreg.Rd |only eha-1.2-0/eha/man/print.weibreg.Rd | 3 - eha-1.2-0/eha/man/toBinary.Rd | 1 eha-1.2-0/eha/man/toDate.Rd | 2 eha-1.2-0/eha/man/toTime.Rd | 2 eha-1.2-0/eha/man/wfunk.Rd | 6 +- eha-1.2-0/eha/src/Makevars | 2 eha-1.2-0/eha/src/aftexpreg.c |only eha-1.2-0/eha/src/aftreg.c |only eha-1.2-0/eha/src/aftreg.h |only eha-1.2-0/eha/src/coxfun.c | 61 ++++++++++++++------- eha-1.2-0/eha/src/coxfun.h | 6 +- eha-1.2-0/eha/src/getsums.f | 10 +-- eha-1.2-0/eha/src/getsums.null.f | 8 +- eha-1.2-0/eha/src/loglik_aft.c |only eha-1.2-0/eha/src/loglik_aft.h |only eha-1.2-0/eha/src/loglik_ph.c |only eha-1.2-0/eha/src/loglik_ph.h |only eha-1.2-0/eha/src/phexpreg.c |only eha-1.2-0/eha/src/phfun.c |only eha-1.2-0/eha/src/phfun.h |only eha-1.2-0/eha/src/phreg.c |only eha-1.2-0/eha/src/phreg.h |only eha-1.2-0/eha/src/sup.c | 32 ++++++++--- eha-1.2-0/eha/src/sup.h | 1 eha-1.2-0/eha/src/weibreg.c | 66 +++++++++++++++++++++- eha-1.2-0/eha/src/wfunc.f | 48 ++++++++-------- eha-1.2-0/eha/src/wfunc.null.f | 16 ++--- 85 files changed, 439 insertions(+), 247 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/eha/index.html">More information about eha at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package dataframes2xls updated to version 0.4.2 with previous version 0.4.1 dated 2008-06-09 http://dirk.eddelbuettel.com/cranberries/2008/07/20#dataframes2xls_0.4.2 2008-07-20T10:16:00+00:00 <p><strong>Author</strong>: Guido van Steen <br /> <strong>Title</strong>: dataframes2xls writes data frames to xls files <br /> <strong>Description</strong>: dataframes2xls writes data frames to xls files. It supports multiple sheets and basic formatting. <p> Diff between dataframes2xls versions 0.4.1 dated 2008-06-09 and 0.4.2 dated 2008-07-20 <pre> DESCRIPTION | 6 +++--- inst/doc/README | 4 +--- inst/python/csv2xls.py | 2 +- 3 files changed, 5 insertions(+), 7 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/dataframes2xls/index.html">More information about dataframes2xls at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package MatchIt updated to version 2.4-4 with previous version 2.3-1 dated 2007-10-12 http://dirk.eddelbuettel.com/cranberries/2008/07/20#MatchIt_2.4-4 2008-07-20T10:16:00+00:00 <p><strong>Author</strong>: Daniel Ho , Elizabeth Stuart , Kosuke Imai , Gary King <br /> <strong>Title</strong>: MatchIt <br /> <strong>Description</strong>: MatchIt preprocesses data by selecting approximate matched samples of the treated and control groups with similar covariate distributions, drawing on a large variety of matching methods. After preprocessing data with MatchIt, whatever standard parametric technique one might have used without preprocessing can be used, but the results will be far less model dependent. <p> Diff between MatchIt versions 2.3-1 dated 2007-10-12 and 2.4-4 dated 2008-07-20 <pre> DESCRIPTION | 11 R/matchit.R | 4 R/matchit2cem.R |only R/matchit2full.R | 5 R/summary.matchit.subclass.R | 4 demo/00Index | 1 demo/cem.R |only inst/doc/faq.tex | 34 inst/doc/index.shtml | 2 inst/doc/matchit.aux | 98 inst/doc/matchit.bbl | 55 inst/doc/matchit.blg | 69 inst/doc/matchit.log | 130 - inst/doc/matchit.out | 1 inst/doc/matchit.pdf | 5309 ++++++++++++++++++++++--------------------- inst/doc/matchit.tex | 7 inst/doc/matchit.toc | 46 inst/doc/matchit2zelig.tex | 51 inst/doc/matchitref.tex | 27 inst/doc/overview.tex | 2 inst/doc/preprocess.tex | 56 21 files changed, 3080 insertions(+), 2832 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/MatchIt/index.html">More information about MatchIt at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Equal opportunity snarky question of the day tag:blog.lordsutch.com,2008-07-19:4104 2008-07-19T01:18:12+00:00 <p>I hate to pick on my ex-co-blogger Brock, but (in fairness to him) his <a href="http://battlepanda.blogspot.com/2008/07/pigou-club-slogan.html">post</a> is what triggered the thought. Al Gore today <a href="http://news.bbc.co.uk/2/hi/americas/7513002.stm">apparently joined those</a> who have called for a carbon tax to replace payroll taxes, to produce a revenue-neutral means of reducing carbon emissions:</p> <blockquote> <p>To secure this green revolution, Mr Gore said the single most important policy change would be to &ldquo;tax what we burn &ndash; not what we earn&rdquo;.</p> </blockquote> <p>Social security is one of the U.S. government programs funded by a payroll tax. So, does this mean that Gore also believes <a href="http://blog.washingtonpost.com/the-trail/2008/07/09/mccain_sparks_controversy_with.html">social security is a &ldquo;disgrace&rdquo;</a>, as the mass media have <a href="http://www.outsidethebeltway.com/archives/2008/07/mccain_collects_social_security/">distorted</a> John McCain&rsquo;s position to be?</p> Chris Lawrence http://blog.lordsutch.com/ Signifying Nothing Serious (and not-so-serious) commentary from Chris Lawrence. http://blog.lordsutch.com/feed/ 2008-07-22T04:00:29+00:00 Copyright © 2002–08 Chris Lawrence, Brock Sides, and Robert Prather. Obamacon yawn tag:blog.lordsutch.com,2008-07-19:4103 2008-07-19T00:38:44+00:00 <p><a href="http://andrewsullivan.theatlantic.com/the_daily_dish/2008/07/conservatives-f.html">Andrew Sullivan</a> links the debate between <a href="http://www.poliblogger.com/?p=13918">Steven Taylor</a> and <a href="http://www.outsidethebeltway.com/archives/2008/07/conservatives_for_obama_ii/">James Joyner</a> over the merits, or lack thereof, of the Obama alternative for disaffected conservatives. From my point of view, which is a bit more apathetic than disaffected and libertarian than conservative, and thus theoretically (at least) a bit more analytical, things work out as being roughly outlined as follows:</p> <ul> <li>John McCain is, by all reasonable standards of analysis, more conservative than Barack Obama, across the issue space. (At worst on some obscure issue dimensions they may be tied.)</li> <li>All other things being equal, this means the expected policy outcome would be more conservative under a McCain administration than an Obama administration.</li> <li>Therefore, if you want to cast a instrumental vote, and you are conservative, you probably should vote for McCain.</li> </ul> <p>Personally, I don&rsquo;t think there are large, meaningful differences between Obama and McCain on the few issues that poorly map to ideology, like executive power, where there are few politicians of principle whose positions don&rsquo;t reflect the partisanship of the executive officeholder. Obama is probably a bit more of a liberal internationalist than McCain when it comes to small-scale interventions, although I can&rsquo;t see this making a huge difference or really being a useful voting criterion. By and large I think what&rsquo;s happening in Iraq, rather than who&rsquo;s in the White House, really matters when it comes to bringing the troops home sooner rather than later, although I suppose there may be a difference in the semantic game we&rsquo;re going to play with distinguishing &ldquo;the troops&rdquo; who leave and those who remain. Afghanistan isn&rsquo;t going to be fixed until the Pakistanis fix themselves, and I don&rsquo;t see <em>that</em> happening any time soon. McCain as a hawk can probably more credibly produce a <em>rapprochement</em> with the various pariah states of varying degrees (Cuba, Iran, North Korea, Sudan, Venezuela, etc.), but I don&rsquo;t think there is a huge obstacle to Obama doing the same (he may just have to do <em>less</em>).</p> <p>From an apathetic libertarian perspective, neither candidate is particularly appealing, although generally speaking I find critiquing Washington from the (Postrel-1990s <em>Reason</em>) economic classical liberal perspective more interesting than from the (Gillespie-current <em>Reason</em>) social/cultural left. As a future upper-middle-income government bureaucrat I suppose the Democrats are more likely to govern in support of my personal, short-term financial interests (throwing money at higher education, lower taxes on the &ldquo;middle class&rdquo; which seemingly tops out right at the peak Congressional salary, transferring more of my personal health care expenses onto the backs of Bill Gates and Mark Cuban), even if I have to balance that against the possibility that eight years of Democrats at 1600 Pennsylvania Avenue could fuck up America economically to the point it becomes Britain circa 1978, and the <a href="http://backspace.com/notes/2002/09/the-poster-that-won-the-election.php">billboards won&rsquo;t even be as catchy</a>.</p> <p>All this is, of course, really just a boring way of saying that since my vote really won&rsquo;t matter I&rsquo;m having a hard time feeling all that motivated to care one way or the other.</p> Chris Lawrence http://blog.lordsutch.com/ Signifying Nothing Serious (and not-so-serious) commentary from Chris Lawrence. http://blog.lordsutch.com/feed/ 2008-07-22T04:00:29+00:00 Copyright © 2002–08 Chris Lawrence, Brock Sides, and Robert Prather. Package tseries updated to version 0.10-16 with previous version 0.10-15 dated 2008-05-08 http://dirk.eddelbuettel.com/cranberries/2008/07/18#tseries_0.10-16 2008-07-18T14:16:00+00:00 <p><strong>Author</strong>: Compiled by Adrian Trapletti <br /> <strong>Title</strong>: Time series analysis and computational finance <br /> <strong>Description</strong>: Package for time series analysis and computational finance <p> Diff between tseries versions 0.10-15 dated 2008-05-08 and 0.10-16 dated 2008-07-18 <pre> ChangeLog | 10 +++++++++- DESCRIPTION | 6 +++--- R/finance.R | 4 ++-- 3 files changed, 14 insertions(+), 6 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/tseries/index.html">More information about tseries at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package chron updated to version 2.3-24 with previous version 2.3-23 dated 2008-05-20 http://dirk.eddelbuettel.com/cranberries/2008/07/18#chron_2.3-24 2008-07-18T14:16:00+00:00 <p><strong>Author</strong>: S original by David James , R port by Kurt Hornik . <br /> <strong>Title</strong>: Chronological objects which can handle dates and times <br /> <strong>Description</strong>: Chronological objects which can handle dates and times <p> Diff between chron versions 2.3-23 dated 2008-05-20 and 2.3-24 dated 2008-07-18 <pre> ChangeLog | 9 +++++++++ DESCRIPTION | 6 +++--- R/chron.R | 22 ++++++++++++++++------ man/chron.Rd | 11 +++++++++++ 4 files changed, 39 insertions(+), 9 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/chron/index.html">More information about chron at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package yaImpute updated to version 1.0-5 with previous version 1.0-4 dated 2008-03-21 http://dirk.eddelbuettel.com/cranberries/2008/07/18#yaImpute_1.0-5 2008-07-18T10:17:00+00:00 <p><strong>Author</strong>: Nicholas L. Crookston , Andrew O. Finley <br /> <strong>Title</strong>: yaImpute: An R Package for k-NN Imputation <br /> <strong>Description</strong>: Performs popular nearest neighbor routines for imputation <p> Diff between yaImpute versions 1.0-4 dated 2008-03-21 and 1.0-5 dated 2008-07-18 <pre> DESCRIPTION | 22 +++++++++++----------- NAMESPACE | 14 +++++++------- R/asciigridimpute.R | 18 +++++++++++++----- R/yai.R | 19 ++++++++++++++----- 4 files changed, 45 insertions(+), 28 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/yaImpute/index.html">More information about yaImpute at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package spatstat updated to version 1.13-4 with previous version 1.13-3 dated 2008-06-23 http://dirk.eddelbuettel.com/cranberries/2008/07/18#spatstat_1.13-4 2008-07-18T10:17:00+00:00 <p><strong>Author</strong>: Adrian Baddeley and Rolf Turner , with substantial contributions of code by Marie-Colette van Lieshout, Rasmus Waagepetersen, Kasper Klitgaard Berthelsen and Dominic Schuhmacher. Additional contributions by C. Beale, B. Biggerstaff, R. Bivand, F. Bonneu, J.B. Chen, Y.C. Chin, M. de la Cruz, P.J. Diggle, S. Eglen, A. Gault, M. Genton, P. Grabarnik, C. Graf, J. Franklin, U. Hahn, M. Hering, M.B. Hansen, M. Hazelton, J. Heikkinen, K. Hornik, R. Ihaka, R. John-Chandran, D. Johnson, J. Laake, J. Mateu, P. McCullagh, X.C. Mi, J. Moller, L.S. Nielsen, E. Parilov, J. Picka, M. Reiter, B.D. Ripley, B. Rowlingson, J. Rudge, A. Sarkka, K. Schladitz, B.T. Scott, I.-M. Sintorn, M. Spiess, M. Stevenson, P. Surovy, B. Turlach, A. van Burgel, H. Wang and S. Wong. <br /> <strong>Title</strong>: Spatial Point Pattern analysis, model-fitting, simulation, tests <br /> <strong>Description</strong>: A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Contains functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, and pixel images. Point process models can be fitted to point pattern data. Cluster type models are fitted by the method of minimum contrast. Very general Gibbs point process models can be fitted to point pattern data using a function ppm similar to lm or glm. Models may include dependence on covariates, interpoint interaction and dependence on marks. Fitted models can be simulated automatically. Also provides facilities for formal inference (such as chi-squared tests) and model diagnostics (including simulation envelopes, residuals, residual plots and Q-Q plots). <p> Diff between spatstat versions 1.13-3 dated 2008-06-23 and 1.13-4 dated 2008-07-18 <pre> DESCRIPTION | 8 ++-- INDEX | 10 +++++ R/closepairs.R | 82 ++++++++++++++++++++++++++++++++++------------ R/diagnoseppm.R | 4 +- R/effectfun.R |only R/eval.im.R | 9 ++--- R/kppm.R |only R/levelset.R | 8 ++-- R/lurking.R | 10 +++-- R/marks.R | 3 + R/mpl.R | 9 +++-- R/options.R | 3 + R/plot.im.R | 32 +++++++++++++----- R/ppmclass.R | 22 ++++++++++++ R/ppp.S | 52 +++++++++++++++++------------ R/update.ppm.R | 24 +++++++++++-- R/window.S | 8 ++++ R/wingeom.S | 84 ++++++++++++++++++++++++++++++++++++++++++------ data/chorley.rda |binary data/urkiola.rda |only demo/data.R | 3 + demo/spatstat.R | 2 - man/00spatstat.Rd | 67 ++++++++++++++++++++++++++------------ man/as.owin.Rd | 9 ++++- man/effectfun.Rd |only man/eval.im.Rd | 3 + man/gpc2owin.Rd |only man/internal.Rd | 12 ++++++ man/intersect.owin.Rd | 8 +--- man/kppm.Rd |only man/lurking.Rd | 4 +- man/matclust.estK.Rd | 7 +++- man/mincontrast.Rd | 3 + man/plot.im.Rd | 55 ++++++++++++++++++++++++++----- man/plot.kppm.Rd |only man/predict.kppm.Rd |only man/rMatClust.Rd | 9 ++--- man/rSSI.Rd | 2 - man/rThomas.Rd | 6 ++- man/rmpoispp.Rd | 6 ++- man/rpoispp.Rd | 25 ++++++++++++-- man/simulate.kppm.Rd |only man/solutionset.Rd | 4 +- man/spatstat.options.Rd | 6 +++ man/subset.ppp.Rd | 12 ++++-- man/thomas.estK.Rd | 4 ++ man/update.kppm.Rd |only man/update.ppm.Rd | 16 ++++++++- man/urkiola.Rd |only tests/step.R |only 50 files changed, 482 insertions(+), 149 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/spatstat/index.html">More information about spatstat at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package sampleSelection updated to version 0.6-1 with previous version 0.6-0 dated 2008-07-14 http://dirk.eddelbuettel.com/cranberries/2008/07/18#sampleSelection_0.6-1 2008-07-18T10:16:00+00:00 <p><strong>Author</strong>: Arne Henningsen , Ott Toomet <br /> <strong>Title</strong>: Sample Selection Models <br /> <strong>Description</strong>: Estimation of Sample Selection Models <p> Diff between sampleSelection versions 0.6-0 dated 2008-07-14 and 0.6-1 dated 2008-07-18 <pre> DESCRIPTION | 6 +++--- INDEX | 4 ++-- inst/doc |only 3 files changed, 5 insertions(+), 5 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/sampleSelection/index.html">More information about sampleSelection at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package pscl updated to version 1.00 with previous version 0.97 dated 2008-07-16 http://dirk.eddelbuettel.com/cranberries/2008/07/18#pscl_1.00 2008-07-18T10:16:00+00:00 <p><strong>Author</strong>: Simon Jackman, with contributions from Alex Tahk, Achim Zeileis, Christina Maimone and Jim Fearon <br /> <strong>Title</strong>: Political Science Computational Laboratory, Stanford University <br /> <strong>Description</strong>: Bayesian analysis of item-response theory (IRT) models, roll call analysis; computing highest density regions; maximum likelihood estimation of zero-inflated and hurdle models for count data; goodness-of-fit measures for GLMs; data sets used in writing and teaching at the Political Science Computational Laboratory; seats-votes curves. <p> Diff between pscl versions 0.97 dated 2008-07-16 and 1.00 dated 2008-07-18 <pre> pscl-0.97/pscl/inst/doc/.build.timestamp |only pscl-1.00/pscl/DESCRIPTION | 6 +++--- pscl-1.00/pscl/HISTORY | 20 ++++++++++++-------- pscl-1.00/pscl/R/margins.rollcall.r | 4 ++-- pscl-1.00/pscl/inst/CITATION | 28 +++++++++++++++++++--------- pscl-1.00/pscl/inst/doc/auto/countreg.el | 17 +++++++++++------ pscl-1.00/pscl/inst/doc/countreg.pdf |binary pscl-1.00/pscl/man/computeMargins.Rd | 6 +++--- pscl-1.00/pscl/man/hurdle.Rd | 12 +++++------- pscl-1.00/pscl/man/zeroinfl.Rd | 12 +++++------- 10 files changed, 60 insertions(+), 45 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/pscl/index.html">More information about pscl at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package nsRFA updated to version 0.5-3 with previous version 0.5-2 dated 2008-04-24 http://dirk.eddelbuettel.com/cranberries/2008/07/18#nsRFA_0.5-3 2008-07-18T10:16:00+00:00 <p><strong>Author</strong>: Alberto Viglione <br /> <strong>Title</strong>: Non-supervised Regional Frequency Analysis <br /> <strong>Description</strong>: A collection of statistical tools for objective (non-supervised) applications of the Regional Frequency Analysis methods in hydrology. <p> Diff between nsRFA versions 0.5-2 dated 2008-04-24 and 0.5-3 dated 2008-07-18 <pre> DESCRIPTION | 6 +++--- R/BayesianMCMC.R |only R/EXP.R | 14 +++++++++----- R/GENLOGIS.R | 9 ++++++--- R/GENPAR.R | 9 ++++++--- R/GEV.R | 12 ++++++++---- R/LOGNORM.R | 9 ++++++--- R/MLlaio2004.R | 12 ++++++------ R/P3.R | 8 ++++---- data/functionsLaio.rda |binary inst/doc/Fig1ElamirSeheult.pdf |binary man/BayesianMCMC.Rd |only man/functionsLaio.Rd | 8 ++++---- 13 files changed, 52 insertions(+), 35 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/nsRFA/index.html">More information about nsRFA at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package deSolve updated to version 1.2 with previous version 1.1 dated 2008-06-01 http://dirk.eddelbuettel.com/cranberries/2008/07/18#deSolve_1.2 2008-07-18T10:16:00+00:00 <p><strong>Author</strong>: Karline Soetaert , Thomas Petzoldt , R. Woodrow Setzer <br /> <strong>Title</strong>: General solvers for ordinary differential equations (ODE) and for differential algebraic equations (DAE) <br /> <strong>Description</strong>: Functions that solve a system of first-order ordinary differential equations (ODE) and of differential algebraic equations (DAE). The functions provide an interface to the FORTRAN functions lsoda, lsodar, lsode, lsodes, dvode and daspk. The package also contains routines designed for solving uni-and multicomponent 1-D and 2-D reactive transport models. <p> Diff between deSolve versions 1.1 dated 2008-06-01 and 1.2 dated 2008-07-18 <pre> deSolve-1.1/deSolve/inst/doc/compiledCode.tex |only deSolve-1.2/deSolve/DESCRIPTION | 21 - deSolve-1.2/deSolve/R/daspk.R | 2 deSolve-1.2/deSolve/R/lsoda.R | 2 deSolve-1.2/deSolve/R/lsodar.R | 2 deSolve-1.2/deSolve/R/lsode.R | 440 +++++++++++++------------- deSolve-1.2/deSolve/R/lsodes.R | 2 deSolve-1.2/deSolve/R/rk4.R | 57 --- deSolve-1.2/deSolve/R/rkAuto.R | 8 deSolve-1.2/deSolve/R/rkMethod.R | 18 - deSolve-1.2/deSolve/R/vode.R | 2 deSolve-1.2/deSolve/demo/rk_solvers.R | 7 deSolve-1.2/deSolve/inst/doc/compiledCode.Rnw |only deSolve-1.2/deSolve/inst/doc/compiledCode.pdf |binary deSolve-1.2/deSolve/inst/doc/jss.bst |only deSolve-1.2/deSolve/inst/doc/jss.cls |only deSolve-1.2/deSolve/inst/doc/mymod.c |only deSolve-1.2/deSolve/inst/doc/mymod.f |only deSolve-1.2/deSolve/inst/dynload/satres.c |only deSolve-1.2/deSolve/inst/dynload/satres.f |only deSolve-1.2/deSolve/inst/dynload/satres.r |only deSolve-1.2/deSolve/inst/svnversion | 2 deSolve-1.2/deSolve/man/ccl4model.Rd | 3 deSolve-1.2/deSolve/man/deSolve.Rd |only deSolve-1.2/deSolve/man/lsodar.Rd | 2 deSolve-1.2/deSolve/man/ode.1D.Rd | 4 deSolve-1.2/deSolve/man/ode.2D.Rd | 2 deSolve-1.2/deSolve/man/rk.Rd | 87 ++--- deSolve-1.2/deSolve/man/rk4.Rd | 13 deSolve-1.2/deSolve/man/rkMethod.Rd | 51 +-- deSolve-1.2/deSolve/src/R_init_deSolve.c |only deSolve-1.2/deSolve/src/deSolve_utils.c | 4 32 files changed, 340 insertions(+), 389 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/deSolve/index.html">More information about deSolve at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 New package expert with initial version 0.1-1 http://dirk.eddelbuettel.com/cranberries/2008/07/18#expert_0.1-1 2008-07-18T10:16:00+00:00 <strong>Package</strong>: expert<br /> <strong>Type</strong>: Package<br /> <strong>Title</strong>: Modeling of data using expert opinion<br /> <strong>Version</strong>: 0.1-1<br /> <strong>Date</strong>: 2008-07-16<br /> <strong>Author</strong>: Mathieu Pigeon, Michel Jacques, Vincent Goulet<br /> <strong>Maintainer</strong>: Mathieu Pigeon <br /> <strong>Description</strong>: <br /> <strong>Depends</strong>: R (>= 2.6.0), stats<br /> <strong>License</strong>: GPL (>= 2)<br /> <strong>Encoding</strong>: latin1<br /> <strong>LazyLoad</strong>: yes<br /> <strong>LazyData</strong>: yes<br /> <strong>ZipData</strong>: yes<br /> <strong>Packaged</strong>: Thu Jul 17 11:43:02 2008; MaTT<br /> <p> <a href="http://cran.r-project.org/web/packages/expert/index.html">More information about expert at CRAN</a></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package bigmemory updated to version 2.2 with previous version 2.1 dated 2008-06-23 http://dirk.eddelbuettel.com/cranberries/2008/07/18#bigmemory_2.2 2008-07-18T10:16:00+00:00 <p><strong>Author</strong>: Michael J. Kane and John W. Emerson <br /> <strong>Title</strong>: Manage massive matrices in R using C++, with UNIX support for shared memory <br /> <strong>Description</strong>: Use C++ to create, store, access, and manipulate massive matrices. Under UNIX, it also supports use of shared memory. <p> Diff between bigmemory versions 2.1 dated 2008-06-23 and 2.2 dated 2008-07-18 <pre> DESCRIPTION | 6 +++--- R/kmeans.R | 2 ++ man/bigmemory-package.Rd | 4 ++-- man/kmeans.big.matrix.Rd | 6 ++++++ 4 files changed, 13 insertions(+), 5 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/bigmemory/index.html">More information about bigmemory at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package arm updated to version 1.1-13 with previous version 1.1-12 dated 2008-07-17 http://dirk.eddelbuettel.com/cranberries/2008/07/18#arm_1.1-13 2008-07-18T10:16:00+00:00 <p><strong>Author</strong>: Andrew Gelman , Yu-Sung Su , Masanao Yajima , Jennifer Hill , Maria Grazia Pittau , Jouni Kerman and Tian Zheng <br /> <strong>Title</strong>: Data Analysis Using Regression and Multilevel/Hierarchical Models <br /> <strong>Description</strong>: R functions for processing lm, glm, mer and polr outputs. <p> Diff between arm versions 1.1-12 dated 2008-07-17 and 1.1-13 dated 2008-07-18 <pre> CHANGELOG | 5 +++++ DESCRIPTION | 6 +++--- R/bayespolr.R | 2 +- 3 files changed, 9 insertions(+), 4 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/arm/index.html">More information about arm at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package R.matlab updated to version 1.2.2 with previous version 1.1.4 dated 2007-11-29 http://dirk.eddelbuettel.com/cranberries/2008/07/18#R.matlab_1.2.2 2008-07-18T10:16:00+00:00 <p><strong>Author</strong>: Henrik Bengtsson , Jason Riedy <br /> <strong>Title</strong>: Read and write of MAT files together with R-to-Matlab connectivity <br /> <strong>Description</strong>: This package provides methods to read and write MAT files. It also makes it possible to communicate (evaluate code, send and retrieve objects etc.) with Matlab v6 or higher running locally or on a remote host. <p> Diff between R.matlab versions 1.1.4 dated 2007-11-29 and 1.2.2 dated 2008-07-18 <pre> R.matlab-1.1.4/R.matlab/inst/HISTORY |only R.matlab-1.2.2/R.matlab/DESCRIPTION | 13 R.matlab-1.2.2/R.matlab/R/000.R | 25 R.matlab-1.2.2/R.matlab/R/999.package.R | 9 R.matlab-1.2.2/R.matlab/R/Matlab.R | 4 R.matlab-1.2.2/R.matlab/R/readMat.R | 3683 +++++----- R.matlab-1.2.2/R.matlab/R/writeMat.R | 686 + R.matlab-1.2.2/R.matlab/incl/readMat.Rex | 22 R.matlab-1.2.2/R.matlab/inst/NEWS |only R.matlab-1.2.2/R.matlab/inst/mat-files/StructWithSparseMatrix-v4.mat |only R.matlab-1.2.2/R.matlab/man/Matlab.Rd | 63 R.matlab-1.2.2/R.matlab/man/R.matlab-package.Rd | 14 R.matlab-1.2.2/R.matlab/man/Sys.setenv.Rd | 2 R.matlab-1.2.2/R.matlab/man/readMat.Rd | 52 14 files changed, 2425 insertions(+), 2148 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/R.matlab/index.html">More information about R.matlab at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 New package NetIndices with initial version 1.1 http://dirk.eddelbuettel.com/cranberries/2008/07/18#NetIndices_1.1 2008-07-18T10:16:00+00:00 <strong>Package</strong>: NetIndices<br /> <strong>Version</strong>: 1.1<br /> <strong>Title</strong>: Estimates network indices, including trophic structure of foodwebs<br /> <strong>Author</strong>: Karline Soetaert , Julius Kipkeygon Kones<br /> <strong>Maintainer</strong>: Karline Soetaert <br /> <strong>Depends</strong>: R (>= 2.01), MASS<br /> <strong>Description</strong>: Given a network (e.g. a food web), estimates several network indices. These include: Ascendency network indices, Direct and indirect dependencies, Effective measures, Environ network indices, General network indices, Pathway analysis, Network uncertainty indices and constraint efficiencies and the trophic level and omnivory indices of food webs.<br /> <strong>License</strong>: GPL<br /> <strong>LazyData</strong>: yes<br /> <strong>Packaged</strong>: Fri Jul 18 09:39:11 2008; hornik<br /> <p> <a href="http://cran.r-project.org/web/packages/NetIndices/index.html">More information about NetIndices at CRAN</a></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package Amelia updated to version 1.1-32 with previous version 1.1-30 dated 2008-06-09 http://dirk.eddelbuettel.com/cranberries/2008/07/18#Amelia_1.1-32 2008-07-18T10:16:00+00:00 <p><strong>Author</strong>: James Honaker , Gary King , Matthew Blackwell <br /> <strong>Title</strong>: Amelia II: A Program for Missing Data <br /> <strong>Description</strong>: Amelia II "multiply imputes" missing data in a single cross-section (such as a survey), from a time series (like variables collected for each year in a country), or from a time-series-cross-sectional data set (such as collected by years for each of several countries). Amelia II implements our bootstrapping-based algorithm that gives essentially the same answers as the standard IP or EMis approaches, is usually considerably faster than existing approaches and can handle many more variables. Unlike Amelia I and other statistically rigorous imputation software, it virtually never crashes (but please let us know if you find to the contrary!). The program also generalizes existing approaches by allowing for trends in time series across observations within a cross-sectional unit, as well as priors that allow experts to incorporate beliefs they have about the values of missing cells in their data. Amelia II also includes useful diagnostics of the fit of multiple imputation models. The program works from the R command line or via a graphical user interface that does not require users to know R. <p> Diff between Amelia versions 1.1-30 dated 2008-06-09 and 1.1-32 dated 2008-07-18 <pre> DESCRIPTION | 6 R/ameliagui.r | 4 R/emb.r | 12 inst/doc/amelia.bbl | 6 inst/doc/amelia.blg | 2 inst/doc/amelia.log | 4 inst/doc/amelia.pdf | 686 +++++++++++++++++++++++++-------------------------- inst/doc/index.shtml | 13 8 files changed, 372 insertions(+), 361 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/Amelia/index.html">More information about Amelia at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package playwith updated to version 0.9-8 with previous version 0.9-7 dated 2008-07-15 http://dirk.eddelbuettel.com/cranberries/2008/07/17#playwith_0.9-8 2008-07-17T14:16:00+00:00 <p><strong>Author</strong>: Felix Andrews <br /> <strong>Title</strong>: A GUI for interactive plots using GTK+ <br /> <strong>Description</strong>: A GTK+ graphical user interface for viewing and interacting with R plots. It tries to work out the structure of a plot, in order to interact with it. The built-in features include: zooming the data space, identifying data points, editing and annotating the plot, and saving to a file. New tools can be defined. Also includes latticist, a lattice-based tool for exploratory visualisation. <p> Diff between playwith versions 0.9-7 dated 2008-07-15 and 0.9-8 dated 2008-07-17 <pre> DESCRIPTION | 6 R/API.R | 27 ++-- R/latticist.R | 295 ++++++++++++++------------------------------- R/marginals.R |only R/playTools.R | 28 ++-- R/playTools_clickhandler.R | 4 R/playTools_options.R | 2 R/playTools_time.mode.R | 2 R/utilities.R | 16 +- inst/NEWS | 6 man/latticist.Rd | 13 + man/marginals.Rd | 20 ++- man/playwith.Rd | 3 13 files changed, 172 insertions(+), 250 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/playwith/index.html">More information about playwith at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package ic.infer updated to version 0.8-1 with previous version 0.8 dated 2008-07-15 http://dirk.eddelbuettel.com/cranberries/2008/07/17#ic.infer_0.8-1 2008-07-17T14:16:00+00:00 <p><strong>Author</strong>: Ulrike Groemping <br /> <strong>Title</strong>: Inequality constrained inference in linear normal situations <br /> <strong>Description</strong>: This package implements parameter estimation in normal (linear) models under linear equality and inequality constraints and implements normal likelihood ratio tests involving inequality-constrained hypotheses. For inequality-constrained linear models, averaging over R-squared for different orderings of regressors is also included. <p> Diff between ic.infer versions 0.8 dated 2008-07-15 and 0.8-1 dated 2008-07-17 <pre> DESCRIPTION | 6 +++--- R/all.R2.R | 4 ++++ R/or.relimp.R | 4 ++++ R/orlm.R | 9 +++++++-- inst/doc/News.pdf |binary man/or.relimp.rd | 5 ++++- man/orlm.rd | 16 +++++++++++++--- 7 files changed, 35 insertions(+), 9 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/ic.infer/index.html">More information about ic.infer at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package evir updated to version 1.6 with previous version 1.5 dated 2007-05-01 http://dirk.eddelbuettel.com/cranberries/2008/07/17#evir_1.6 2008-07-17T14:16:00+00:00 <p><strong>Author</strong>: S original (EVIS) by Alexander McNeil , R port by Alec Stephenson . <br /> <strong>Title</strong>: Extreme Values in R <br /> <strong>Description</strong>: Functions for extreme value theory, which may be divided into the following groups; exploratory data analysis, block maxima, peaks over thresholds (univariate and bivariate), point processes, gev/gpd distributions. <p> Diff between evir versions 1.5 dated 2007-05-01 and 1.6 dated 2008-07-17 <pre> DESCRIPTION | 9 ++++----- inst/CHANGES | 10 +++++++--- 2 files changed, 11 insertions(+), 8 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/evir/index.html">More information about evir at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package evd updated to version 2.2-4 with previous version 2.2-3 dated 2006-09-29 http://dirk.eddelbuettel.com/cranberries/2008/07/17#evd_2.2-4 2008-07-17T14:16:00+00:00 <p><strong>Author</strong>: Alec Stephenson. Function fbvpot by Chris Ferro. <br /> <strong>Title</strong>: Functions for extreme value distributions <br /> <strong>Description</strong>: Extends simulation, distribution, quantile and density functions to univariate and multivariate parametric extreme value distributions, and provides fitting functions which calculate maximum likelihood estimates for univariate and bivariate maxima models, and for univariate and bivariate threshold models. <p> Diff between evd versions 2.2-3 dated 2006-09-29 and 2.2-4 dated 2008-07-17 <pre> DESCRIPTION | 7 +++---- R/uvfit.R | 4 +++- inst/CHANGES | 7 +++++++ 3 files changed, 13 insertions(+), 5 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/evd/index.html">More information about evd at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package arm updated to version 1.1-12 with previous version 1.1-11 dated 2008-07-15 http://dirk.eddelbuettel.com/cranberries/2008/07/17#arm_1.1-12 2008-07-17T14:16:00+00:00 <p><strong>Author</strong>: Andrew Gelman , Yu-Sung Su , Masanao Yajima , Jennifer Hill , Maria Grazia Pittau , Jouni Kerman and Tian Zheng <br /> <strong>Title</strong>: Data Analysis Using Regression and Multilevel/Hierarchical Models <br /> <strong>Description</strong>: R functions for processing lm, glm, mer and polr outputs. <p> Diff between arm versions 1.1-11 dated 2008-07-15 and 1.1-12 dated 2008-07-17 <pre> CHANGELOG | 7 ++++++- DESCRIPTION | 6 +++--- R/bayespolr.R | 19 ++++++++++++------- 3 files changed, 21 insertions(+), 11 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/arm/index.html">More information about arm at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 packages:cran:ltm http://wiki.r-project.org/rwiki/doku.php?id=packages:cran:ltm&amp;do=diff1216297508 2008-07-17T13:25:08+00:00 This package provides a flexible framework for Item Response Theory analyses for dichotomous and polytomous data under a Marginal Maximum Likelihood approach. The fitting algorithms provide valid inferences under Missing At Random missing data mecha... Dimitris Rizopoulos dimitris.rizopoulos@med.kuleuven.be http://wiki.r-project.org/rwiki/ R Wiki http://wiki.r-project.org/rwiki/feed.php 2008-07-25T07:30:53+00:00 packages:cran:jm http://wiki.r-project.org/rwiki/doku.php?id=packages:cran:jm&amp;do=diff1216297192 2008-07-17T13:19:52+00:00 This package fits shared parameter models for the joint modelling of normal longitudinal responses and event times under a maximum likelihood approach. Various options for the survival model and optimization/integration algorithms are provided. De... Dimitris Rizopoulos dimitris.rizopoulos@med.kuleuven.be http://wiki.r-project.org/rwiki/ R Wiki http://wiki.r-project.org/rwiki/feed.php 2008-07-25T07:30:53+00:00 Package popbio updated to version 1.1.9 with previous version 1.1.8 dated 2008-03-14 http://dirk.eddelbuettel.com/cranberries/2008/07/16#popbio_1.1.9 2008-07-16T22:16:00+00:00 <p><strong>Author</strong>: Chris Stubben, Brook Milligan, Patrick Nantel <br /> <strong>Title</strong>: Construction and analysis of matrix population models <br /> <strong>Description</strong>: Construct and analyze projection matrix models from a demography study of marked individuals classified by age or stage. The package covers methods described in Matrix Population Models by Caswell (2001) and Quantitative Conservation Biology by Morris and Doak (2002). <p> Diff between popbio versions 1.1.8 dated 2008-03-14 and 1.1.9 dated 2008-07-16 <pre> popbio-1.1.8/popbio/data/hudcorrs.R |only popbio-1.1.8/popbio/inst/doc |only popbio-1.1.9/popbio/DESCRIPTION | 6 +-- popbio-1.1.9/popbio/R/multiresultm.R | 2 - popbio-1.1.9/popbio/R/projection.matrix.R | 11 +++-- popbio-1.1.9/popbio/R/vitalsens.R | 2 - popbio-1.1.9/popbio/data/hudcorrs.rda |only popbio-1.1.9/popbio/inst/._CITATION |only popbio-1.1.9/popbio/inst/CITATION |only popbio-1.1.9/popbio/inst/ChangeLog |only popbio-1.1.9/popbio/man/01Introduction.Rd | 7 ++- popbio-1.1.9/popbio/man/02Caswell.Rd | 9 ++++ popbio-1.1.9/popbio/man/boot.transitions.Rd | 50 ++++++++----------------- popbio-1.1.9/popbio/man/extCDF.Rd | 3 - popbio-1.1.9/popbio/man/hudcorrs.Rd | 4 -- popbio-1.1.9/popbio/man/multiresultm.Rd | 12 +++--- popbio-1.1.9/popbio/man/projection.matrix.Rd | 53 ++++++++++++--------------- popbio-1.1.9/popbio/man/teasel.Rd | 2 - popbio-1.1.9/popbio/man/test.census.Rd | 24 ++++++------ popbio-1.1.9/popbio/man/vitalsens.Rd | 6 +-- popbio-1.1.9/popbio/man/woodpecker.Rd | 4 ++ 21 files changed, 97 insertions(+), 98 deletions(-)</pre> <p> <a href="http://cran.r-project.org/web/packages/popbio/index.html">More information about popbio at CRAN</a></p></p></p> CRANberries http://dirk.eddelbuettel.com/cranberries CRANberries CRANberries shows what's coming from CRAN http://dirk.eddelbuettel.com/cranberries/index.rss 2008-07-21T18:31:01+00:00 Package pomp updated to version 0.20-2 with previous version 0.19-1 dated 2008-05-19 http://dirk.eddelbuettel.com/cranberries/2008/07/16#pomp_0.20-2 2008-07-16T22:16:00+00:00 <p><strong>Author</strong>: Aaron A. King, Edward L. Ionides, Carles Martinez Breto <br /> <strong>Title</strong>: Partially-observed Markov processes <br /> <strong>Description</strong>: Inference methods for partially-observed Markov processes <p> Diff between pomp versions 0.19-1 dated 2008-05-19 and 0.20-2 dated 2008-07-16 <pre> pomp-0.19-1/pomp/R/print-pomp.R |only pomp-0.19-1/pomp/inst/include/euler.h |only pomp-0.19-1/pomp/inst/include/lookup_table.h |only pomp-0.19-1/pomp/src/euler.h |only pomp-0.19-1/pomp/src/lookup_table.h |only pomp-0.20-2/pomp/DESCRIPTION | 6 pomp-0.20-2/pomp/NAMESPACE | 20 - pomp-0.20-2/pomp/R/aaa.R | 100 +++++ pomp-0.20-2/pomp/R/compare.mif.R |only pomp-0.20-2/pomp/R/dmeasure-pomp.R | 12 pomp-0.20-2/pomp/R/euler.R | 60 ++- pomp-0.20-2/pomp/R/init.state-pomp.R | 1 pomp-0.20-2/pomp/R/mif-methods.R | 26 + pomp-0.20-2/pomp/R/mif.R | 25 + pomp-0.20-2/pomp/R/plot-pomp.R | 12 pomp-0.20-2/pomp/R/pomp-methods.R | 49 ++ pomp-0.20-2/pomp/R/pomp.R | 288 +++++++++++++++-- pomp-0.20-2/pomp/R/rmeasure-pomp.R | 12 pomp-0.20-2/pomp/R/simulate-pomp.R | 5 pomp-0.20-2/pomp/R/skeleton-pomp.R |only pomp-0.20-2/pomp/data/ou2.rda |binary pomp-0.20-2/pomp/inst/ChangeLog |only pomp-0.20-2/pomp/inst/NEWS |only pomp-0.20-2/pomp/inst/doc/compiled_code_in_pomp.Rnw | 123 ------- pomp-0.20-2/pomp/inst/doc/compiled_code_in_pomp.pdf |binary pomp-0.20-2/pomp/inst/doc/intro_to_pomp.Rnw | 87 ++--- pomp-0.20-2/pomp/inst/doc/intro_to_pomp.pdf |binary pomp-0.20-2/pomp/inst/examples/sir.R | 251 ++++++++------ pomp-0.20-2/pomp/inst/examples/sir.c | 104 ++++-- pomp-0.20-2/pomp/inst/include/pomp.h |only pomp-0.20-2/pomp/man/dmeasure-pomp.Rd | 5 pomp-0.20-2/pomp/man/dprocess-pomp.Rd | 88 ++--- pomp-0.20-2/pomp/man/euler.Rd | 154 +++------ pomp-0.20-2/pomp/man/eulermultinom.Rd | 2 pomp-0.20-2/pomp/man/mif-class.Rd | 15