The ABC’s online political correspondent Emma Rodgers reports on goings-on from the Coalition party room:
Mr Abbott’s comments were met with a hearty “here here” from many MPs in the room.
No. I’m sure what was said was “hear, hear”.
It is often incorrectly spelled “here here”, especially on websites and IM.
Title: Visualizing Categorical Data
Description: Visualization techniques, data sets, summary and inference
procedures aimed particularly at categorical data. Special
emphasis is given to highly extensible grid graphics. The
package was inspired by the book "Visualizing Categorical Data"
by Michael Friendly.
Author: David Meyer, Achim Zeileis, Kurt Hornik
Maintainer: David Meyer
Diff between vcd versions 1.2-7 dated 2009-10-18 and 1.2-8 dated 2010-02-08
DESCRIPTION | 8 ++++---- R/grid_legend.R | 32 ++++++++++++++++---------------- inst/doc/residual-shadings.pdf |binary inst/doc/strucplot.pdf |binary 4 files changed, 20 insertions(+), 20 deletions(-)
Registrations are now open for the R/Finance 2010 conference, to be help April 16-17 in Chicago. Last year's meeting was a great success, and this year's looks to be just as good, with some great keynotes lined up:
There's also a great series of pre-conference tutorials lined up:
The tutorials are a steal at $50 each and sell out fast. Register for the conference and tutorials now at the link below.
(REvolution Computing is a proud sponsor of R/Finance 2010.)
R/Finance 2010: Conference and Tutorial Registration
With thanks to my favourite science blog Bad Astronomy, the late great Carl Sagan sings again, this time on the topic of evolution. He's joined by autotuned Richard David Attenborough and Jane Goodall. Great stuff.
Bad Astronomy: The Unbroken Thread
Title: Basic Non-Compartmental Pharmacokinetics
Description: Estimation of pharmacokinetic parameters using
non-compartmental theory
Author: Thomas Jaki and Martin J. Wolfsegger
Maintainer: Thomas Jaki
Diff between PK versions 1.2-0 dated 2010-01-20 and 1.2-1 dated 2010-02-08
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Title: Function Utilities
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Author: Diethelm Wuertz and many others. See the SOURCE file
Maintainer: Rmetrics Core Team
Diff between fUtilities versions 2100.77 dated 2009-09-29 and 2110.78 dated 2010-02-08
DESCRIPTION | 10 +++++----- man/colorLocator.Rd | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Rmetrics - Markets and Basic Statistics
Description: Environment for teaching "Financial Engineering and
Computational Finance" NOTE: SEVERAL PARTS ARE STILL
PRELIMINARY AND MAY BE CHANGED IN THE FUTURE. THIS TYPICALLY
INCLUDES FUNCTION AND ARGUMENT NAMES, AS WELL AS DEFAULTS FOR
ARGUMENTS AND RETURN VALUES. Please donate, www.rmetrics.org,
to support future activities of the Rmetrics association.
Author: Diethelm Wuertz and Rmetrics core team members, uses code
builtin from the following R contributed packages: gmm from
Pierre Chauss, gld from Robert King, gss from Chong Gu, nortest
from Juergen Gross, HyperbolicDist from David Scott, sandwich
from Thomas Lumley and Achim Zeileis, and fortran/C code from
Kersti Aas.
Maintainer: Rmetrics Core Team
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Title: Multidimensional Numerical Integration
Description: R2Cuba implements four general-purpose multidimensional
integration algorithms: Vegas, Suave, Divonne and Cuhre
Author: The Cuba library has been written by Thomas Hahn
(http://wwwth.mppmu.mpg.de/members/hahn); Interface to R was
written by Annie Bouvier and Kiкn Kiкu
Maintainer: Annie Bouvier
Diff between R2Cuba versions 1.0-3 dated 2010-01-21 and 1.0-4 dated 2010-02-08
DESCRIPTION | 12 ++++++------ R/commoncuba.R | 10 +++------- man/cuhre.Rd | 6 ++++-- 3 files changed, 13 insertions(+), 15 deletions(-)
Title: Robust tests for case-control genetic association studies
Description: This package supplies several robust tests for
case-control genetic association studies. The tests contained
in this package are: allelic based test, Cochran-Armitage trend
test, maximin efficiency robust test, MAX3 test and genetic
model selection test. For each test, the corresponding R code
reports the test statistics and the associated p-value.
Author: Yong ZANG , Wingkam FUNG ,
Gang ZHENG
Maintainer: Yong ZANG
Diff between Rassoc versions 1.01 dated 2009-11-06 and 1.02 dated 2010-02-08
Rassoc-1.01/Rassoc/JSS487_revisionV2.pdf |only Rassoc-1.02/Rassoc/DESCRIPTION | 8 ++++---- Rassoc-1.02/Rassoc/JSS33(8).pdf |only Rassoc-1.02/Rassoc/R/ABT.R | 4 +--- Rassoc-1.02/Rassoc/R/CATT.R | 4 +--- Rassoc-1.02/Rassoc/R/GMS.R | 4 +--- Rassoc-1.02/Rassoc/R/MAX3.R | 4 +--- Rassoc-1.02/Rassoc/R/MERT.R | 4 +--- Rassoc-1.02/Rassoc/inst |only Rassoc-1.02/Rassoc/man/ABT.Rd | 2 +- Rassoc-1.02/Rassoc/man/CATT.Rd | 2 +- Rassoc-1.02/Rassoc/man/GMS.Rd | 2 +- Rassoc-1.02/Rassoc/man/MAX3.Rd | 2 +- Rassoc-1.02/Rassoc/man/MERT.Rd | 2 +- Rassoc-1.02/Rassoc/man/Rassoc-package.Rd | 2 +- 15 files changed, 15 insertions(+), 25 deletions(-)
Title: Bayesian treed Gaussian process models
Description: Bayesian nonstationary, semiparametric nonlinear
regression and design by treed Gaussian processes with jumps to
the limiting linear model (LLM). Special cases also
implemented include Bayesian linear models, CART, treed linear
models, stationary separable and isotropic Gaussian processes.
Provides 1-d and 2-d plotting functions (with projection and
slice capabilities) and tree drawing, designed for
visualization of tgp-class output. Sensitivity analysis and
multi-resolution models are supported. Sequential experimental
design and adaptive sampling functions are also provided,
including ALM, ALC, and expected improvement. The latter
supports derivative-free optimization of noisy black-box
functions.
Author: Robert B. Gramacy and Matt A. Taddy
Maintainer: Robert B. Gramacy
Diff between tgp versions 2.3 dated 2009-12-26 and 2.3-1 dated 2010-02-08
CITATION |only ChangeLog | 6 ++ DESCRIPTION | 6 +- inst/doc/tgp.Rnw | 2 inst/doc/tgp2.Rnw | 97 +++++++++++++++++++++++++++++++--------------- man/btgp.Rd | 6 ++ man/exp2d.Rd | 10 ++++ man/exp2d.Z.Rd | 6 ++ man/friedman.1.data.Rd | 10 ++++ man/tgp-package.Rd | 10 ++++ man/tgp.default.params.Rd | 10 ++++ man/tgp.design.Rd | 6 ++ 12 files changed, 131 insertions(+), 38 deletions(-)
Title: Longitudinal Data
Description: Tools for Longitudinal Data
Author: Christophe Genolini
Maintainer: Christophe Genolini
Diff between longitudinalData versions 0.6 dated 2009-09-03 and 0.6.1 dated 2010-02-08
longitudinalData-0.6.1/longitudinalData/DESCRIPTION | 10 longitudinalData-0.6.1/longitudinalData/NAMESPACE | 13 longitudinalData-0.6.1/longitudinalData/R/clean.r |only longitudinalData-0.6.1/longitudinalData/R/criterion.r | 50 + longitudinalData-0.6.1/longitudinalData/R/distanceFrechet.r |only longitudinalData-0.6.1/longitudinalData/R/function.r | 16 longitudinalData-0.6.1/longitudinalData/R/global.r | 3 longitudinalData-0.6.1/longitudinalData/R/imputation.r | 209 +++++-- longitudinalData-0.6.1/longitudinalData/R/longData.r | 9 longitudinalData-0.6.1/longitudinalData/R/partition.r | 5 longitudinalData-0.6.1/longitudinalData/R/plotLongData.r | 5 longitudinalData-0.6.1/longitudinalData/man/LongData-class.Rd | 6 longitudinalData-0.6.1/longitudinalData/man/distFrechet.Rd |only longitudinalData-0.6.1/longitudinalData/man/distTraj.Rd |only longitudinalData-0.6.1/longitudinalData/man/longitudinalData-package.Rd | 6 longitudinalData-0.6.1/longitudinalData/man/partition.Rd | 2 longitudinalData-0.6.1/longitudinalData/man/pathFrechet.Rd |only longitudinalData-0.6.1/longitudinalData/man/plot.Rd |only longitudinalData-0.6.1/longitudinalData/src |only longitudinalData-0.6.1/longitudinalData/testsDev/apresLongData.RData |only longitudinalData-0.6.1/longitudinalData/testsDev/testCriterion.r | 3 longitudinalData-0.6.1/longitudinalData/testsDev/testDistance.r |only longitudinalData-0.6.1/longitudinalData/testsDev/testFunction.r | 17 longitudinalData-0.6.1/longitudinalData/testsDev/testImputation.r | 271 +++++++--- longitudinalData-0.6.1/longitudinalData/testsDev/testLongData.r | 20 longitudinalData-0.6.1/longitudinalData/testsDev/testPartition.r | 5 longitudinalData-0.6.1/longitudinalData/testsDev/testPlotLongData.r | 3 longitudinalData-0.6.1/longitudinalData/testsDev/verifRayCriterion.r |only longitudinalData-0.6/longitudinalData/man/plotTraj.Rd |only longitudinalData-0.6/longitudinalData/testsDev/evenementsDeVie.aux |only longitudinalData-0.6/longitudinalData/testsDev/evenementsDeVie.dvi |only longitudinalData-0.6/longitudinalData/testsDev/evenementsDeVie.log |only longitudinalData-0.6/longitudinalData/testsDev/evenementsDeVie.tex |only longitudinalData-0.6/longitudinalData/testsDev/testLongData-Partition.r |only 34 files changed, 460 insertions(+), 193 deletions(-)
Title: Estimate inverse probability weights.
Description: Estimate inverse probability weights. These are typically
used to perform inverse probability weighting (IPW) to fit a
marginal structural model (MSM), to estimate causal effects
from observational data. Both data from point treatment
situations and longitudinal studies can be used.
Author: Willem M. van der Wal
Maintainer: Willem M. van der Wal
Diff between ipw versions 1.0 dated 2010-02-04 and 1.0-1 dated 2010-02-08
DESCRIPTION | 8 +- man/haartdat.Rd | 30 +++++----- man/healthdat.Rd | 25 ++++---- man/ipwplot.Rd | 34 ++++++----- man/ipwpoint.Rd | 30 +++++----- man/ipwtm.Rd | 161 ++++++++++++++++++++++++++++++++----------------------- man/timedat.Rd | 134 +++++++++++++++++++++++++++------------------ man/tstartfun.Rd | 4 - 8 files changed, 244 insertions(+), 182 deletions(-)
Title: Dependent Mixture Models
Description: Fit latent (hidden) Markov models on mixed categorical and
continuous (timeseries) data, otherwise known as dependent
mixture models
Author: Ingmar Visser , Maarten Speekenbrink
Maintainer: Ingmar Visser
Diff between depmixS4 versions 0.2-2 dated 2009-06-30 and 0.3-0 dated 2010-02-08
depmixS4-0.2-2/depmixS4/depmixNew-test2.R |only depmixS4-0.2-2/depmixS4/depmixNew-test4.R |only depmixS4-0.2-2/depmixS4/man/response.Rd |only depmixS4-0.2-2/depmixS4/srcll |only depmixS4-0.3-0/depmixS4/DESCRIPTION | 14 - depmixS4-0.3-0/depmixS4/NAMESPACE | 13 - depmixS4-0.3-0/depmixS4/NEWS |only depmixS4-0.3-0/depmixS4/R/allGenerics.R | 10 - depmixS4-0.3-0/depmixS4/R/multinomial.R | 10 - depmixS4-0.3-0/depmixS4/R/responseGLM.R | 2 depmixS4-0.3-0/depmixS4/R/responseGLMMULTINOM.R | 2 depmixS4-0.3-0/depmixS4/R/responseMVN.R | 2 depmixS4-0.3-0/depmixS4/R/responseNORM.R | 2 depmixS4-0.3-0/depmixS4/R/stationary.R |only depmixS4-0.3-0/depmixS4/R/transInit.R | 2 depmixS4-0.3-0/depmixS4/man/GLMresponse.Rd |only depmixS4-0.3-0/depmixS4/man/balance.Rd | 44 ++-- depmixS4-0.3-0/depmixS4/man/depmix-internal.Rd | 17 + depmixS4-0.3-0/depmixS4/man/depmix-methods.Rd | 5 depmixS4-0.3-0/depmixS4/man/depmix.Rd | 61 ++++-- depmixS4-0.3-0/depmixS4/man/depmix.fit.Rd | 4 depmixS4-0.3-0/depmixS4/man/depmixS4-package.Rd | 16 + depmixS4-0.3-0/depmixS4/man/makeDepmix.Rd | 219 ++++++++++++++++++++---- depmixS4-0.3-0/depmixS4/man/mix.Rd | 22 +- depmixS4-0.3-0/depmixS4/man/mix.sim-class.Rd | 8 depmixS4-0.3-0/depmixS4/man/response-class.Rd | 2 depmixS4-0.3-0/depmixS4/man/response-classes.Rd | 4 depmixS4-0.3-0/depmixS4/man/responses.Rd | 1 depmixS4-0.3-0/depmixS4/man/speed.Rd | 24 +- depmixS4-0.3-0/depmixS4/man/transInit.Rd |only 30 files changed, 355 insertions(+), 129 deletions(-)
Title: Climate analysis and empirical-statistical downscaling (ESD)
package for monthly and daily data.
Description: The package contains R functions for retrieving data,
making climate analysis and downscaling of monthly mean and
daily mean global climate scenarios. (Windows-users may need to
obtain the 'ncdf' package from URL
'http://www.stats.ox.ac.uk/pub/RWin/' to get clim.pact to
work). The package is also described in the book
'Empirical-Statistical Downscaling
(http://www.worldscibooks.com/environsci/6908.html)
Author: Rasmus E. Benestad
Maintainer: Rasmus E. Benestad
Diff between clim.pact versions 2.2-39 dated 2009-10-21 and 2.2-41 dated 2010-02-08
clim.pact-2.2-39/clim.pact/data/addland.rda |only clim.pact-2.2-41/clim.pact/DESCRIPTION | 8 ++++---- clim.pact-2.2-41/clim.pact/R/CCA.R | 4 ++-- clim.pact-2.2-41/clim.pact/R/DSpdf.exp.R | 2 +- clim.pact-2.2-41/clim.pact/R/addland.R | 2 +- clim.pact-2.2-41/clim.pact/R/combine.R | 2 +- clim.pact-2.2-41/clim.pact/R/corField.R | 2 +- clim.pact-2.2-41/clim.pact/R/ds.R | 2 +- clim.pact-2.2-41/clim.pact/R/extras.R | 2 +- clim.pact-2.2-41/clim.pact/R/getnordklim.R | 6 ++++-- clim.pact-2.2-41/clim.pact/R/map.R | 2 +- clim.pact-2.2-41/clim.pact/R/retrieve.nc.R | 24 +++++++++++++++--------- clim.pact-2.2-41/clim.pact/R/satellite.R | 2 +- clim.pact-2.2-41/clim.pact/R/station.obj.R | 2 +- clim.pact-2.2-41/clim.pact/data/addland1.rda |only clim.pact-2.2-41/clim.pact/man/CCA.Rd | 4 ++-- clim.pact-2.2-41/clim.pact/man/DSpdf.exp.Rd | 2 ++ clim.pact-2.2-41/clim.pact/man/EOF.Rd | 3 ++- clim.pact-2.2-41/clim.pact/man/addland_data.Rd | 6 +++--- clim.pact-2.2-41/clim.pact/man/anomaly.field.Rd | 10 ++++++---- clim.pact-2.2-41/clim.pact/man/cdfcont.Rd | 3 ++- clim.pact-2.2-41/clim.pact/man/rotate.Rd | 4 ++-- 22 files changed, 53 insertions(+), 39 deletions(-)
Title: statistical disclosure control for tabular data
Description: R-Package for statistical disclosure control for tabular
data.
Author: Bernhard Meindl
Maintainer: Bernhard Meindl
Diff between sdcTable versions 0.0.8 dated 2009-12-28 and 0.0.9 dated 2010-02-08
sdcTable-0.0.8/sdcTable/R/genCodesFromFile.r |only sdcTable-0.0.8/sdcTable/man/genCodesFromFile.Rd |only sdcTable-0.0.9/sdcTable/DESCRIPTION | 10 - sdcTable-0.0.9/sdcTable/NAMESPACE | 2 sdcTable-0.0.9/sdcTable/R/createFullData.r | 125 ++++++++-------- sdcTable-0.0.9/sdcTable/R/genCodesFromList.r |only sdcTable-0.0.9/sdcTable/R/pasteStrVec.r |only sdcTable-0.0.9/sdcTable/R/processTableHITAS.r | 56 +++---- sdcTable-0.0.9/sdcTable/R/zzz.R | 2 sdcTable-0.0.9/sdcTable/configure |only sdcTable-0.0.9/sdcTable/man/createFullData.Rd | 141 +++++++++---------- sdcTable-0.0.9/sdcTable/man/exampleFullData.Rd | 30 ++-- sdcTable-0.0.9/sdcTable/man/exampleMinimalData.Rd | 29 ++- sdcTable-0.0.9/sdcTable/man/genCodesFromList.Rd |only sdcTable-0.0.9/sdcTable/man/pasteStrVec.Rd |only sdcTable-0.0.9/sdcTable/man/processTableHITAS.Rd | 13 - sdcTable-0.0.9/sdcTable/man/processTableHYPERCUBE.Rd | 10 - sdcTable-0.0.9/sdcTable/man/protectTable.Rd | 61 ++++---- sdcTable-0.0.9/sdcTable/man/roundSubtable.Rd | 17 +- sdcTable-0.0.9/sdcTable/man/summary.safeTable.Rd | 17 +- sdcTable-0.0.9/sdcTable/src/Makevars.in |only sdcTable-0.0.9/sdcTable/src/Makevars.win |only sdcTable-0.0.9/sdcTable/src/myPaste.cpp |only 23 files changed, 268 insertions(+), 245 deletions(-)
Title: Draw Geographical Maps
Description: Display of maps. Projection code and larger maps are in
separate packages (mapproj and mapdata).
Author: Original S code by Richard A. Becker and Allan R. Wilks. R
version by Ray Brownrigg
Enhancements by Thomas P Minka
Maintainer: Ray Brownrigg
Diff between maps versions 2.1-0 dated 2009-03-21 and 2.1-1 dated 2010-02-08
DESCRIPTION | 8 ++++---- data/world.cities.rda |binary 2 files changed, 4 insertions(+), 4 deletions(-)
Title: Extra Map Databases
Description: Supplement to maps package, providing the larger and/or
higher-resolution databases.
Author: Original S code by Richard A. Becker and Allan R. Wilks. R
version by Ray Brownrigg
Maintainer: Ray Brownrigg
Diff between mapdata versions 2.1-0 dated 2009-03-21 and 2.1-1 dated 2010-02-08
DESCRIPTION | 8 ++++---- src/Makefile.win | 2 ++ 2 files changed, 6 insertions(+), 4 deletions(-)
Title: Extra Graphical Utilities Based on Lattice
Description: Extra graphical utilities based on lattice
Author: Deepayan Sarkar , Felix Andrews
Maintainer: Deepayan Sarkar
Diff between latticeExtra versions 0.6-5 dated 2010-01-17 and 0.6-6 dated 2010-02-08
DESCRIPTION | 8 ++--- NAMESPACE | 8 ++++- R/c.trellis.R | 7 ++++- R/doubleYScale.R | 39 +++++++++++++++------------- R/ecdfplot.R | 4 +- R/horizonplot.R |only R/layer.R | 3 +- R/mapplot.R | 17 ++++++++---- R/marginal.plot.R | 26 +++++++++++-------- R/panel.scaleArrow.R |only R/panel.tskernel.R | 28 +++++++++++++++----- R/rootogram.R | 8 ++++- R/segplot.R | 4 ++ R/tileplot.R | 2 - R/timeseries.R | 62 ---------------------------------------------- inst/NEWS | 10 +++++++ man/EastAuClimate.Rd | 4 ++ man/USAge.Rd | 1 man/biocAccess.Rd | 2 - man/ecdfplot.Rd | 1 man/horizonplot.Rd |only man/layer.Rd | 4 +- man/mapplot.Rd | 14 ++++++++-- man/panel.scaleArrow.Rd |only man/panel.tskernel.Rd | 22 ++++++++++------ man/panel.xblocks.Rd | 3 +- man/theEconomist.theme.Rd | 2 - 27 files changed, 143 insertions(+), 136 deletions(-)
Title: Edge Preserving Smoothing for Images
Description: Smoothing methods for images which are based on a
redescending M kernel estimator which preserves edges and
corners.
Author: Tim Garlipp
Maintainer: Tim Garlipp
Diff between epsi versions 1.0-3 dated 2007-10-21 and 1.1-0 dated 2010-02-08
epsi-1.0-3/epsi/INDEX |only epsi-1.0-3/epsi/R/zzz.R |only epsi-1.1-0/epsi/DESCRIPTION | 19 ++++++++++--------- epsi-1.1-0/epsi/NAMESPACE |only epsi-1.1-0/epsi/man/CGGM.mean.Rd | 8 +++----- 5 files changed, 13 insertions(+), 14 deletions(-)
Title: Edge Detection and Clustering in Images
Description: Detection of edgepoints in images based on the difference
of two asymmetric M kernel estimators. Linear and circular
regression clustering based on redescending M estimators.
Detection of linear edges in images.
Author: Tim Garlipp
Maintainer: Tim Garlipp
Diff between edci versions 1.0-1 dated 2004-09-28 and 1.1-0 dated 2010-02-08
edci-1.0-1/edci/INDEX |only edci-1.0-1/edci/R/zzz.R |only edci-1.1-0/edci/DESCRIPTION | 23 edci-1.1-0/edci/NAMESPACE |only edci-1.1-0/edci/R/oregMclust.R | 1408 ++++++++++++++++++------------------ edci-1.1-0/edci/man/bestMclust.Rd | 130 +-- edci-1.1-0/edci/man/circMclust.Rd | 273 +++--- edci-1.1-0/edci/man/deldupMclust.Rd | 113 +- edci-1.1-0/edci/man/edgecluster.Rd | 2 edci-1.1-0/edci/man/edgepoints.Rd | 268 +++--- edci-1.1-0/edci/man/eplist.Rd | 2 edci-1.1-0/edci/man/oregMclust.Rd | 262 +++--- edci-1.1-0/edci/src/edgepoints.cc | 801 ++++++++++---------- edci-1.1-0/edci/src/statist.h | 7 14 files changed, 1645 insertions(+), 1644 deletions(-)
Title: Documentation for packages distr, distrEx, distrSim, distrTEst,
distrTeach, distrMod, and distrEllipse
Description: provides documentation in form of a common vignette to
packages distr, distrEx, distrMod, distrSim, distrTEst,
distrTeach, and distrEllipse
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Maintainer: Peter Ruckdeschel
Diff between distrDoc versions 2.2 dated 2009-11-03 and 2.2.1 dated 2010-02-08
DESCRIPTION | 22 inst/doc/Rplots.pdf |only inst/doc/distr.Rnw | 19 inst/doc/distr.pdf |28810 ++++++++++++++++++++++++++-------------------------- 4 files changed, 14711 insertions(+), 14140 deletions(-)
Title: Object orientated implementation of distributions
Description: Object orientated implementation of distributions
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Maintainer: Peter Ruckdeschel
Diff between distr versions 2.2 dated 2009-11-03 and 2.2.2 dated 2010-02-08
DESCRIPTION | 19 R/internalUtils.R | 4 inst/doc/Rplots.pdf |only inst/doc/newDistributions.Rnw | 8 inst/doc/newDistributions.pdf | 6086 ++++++++++++++++++++------------------ man/0distr-package.Rd | 4 man/simplifyD-methods.Rd | 1 tests/Examples/distr-Ex.Rout.save | 399 +- 8 files changed, 3591 insertions(+), 2930 deletions(-)
Title: Algorithms and framework for Nonnegative Matrix Factorization
(NMF).
Description: This package provides a framework to perform Non-negative
Matrix Factorization (NMF). It implements a set of already
published algorithms and seeding methods, and provides a
framework to test, develop and plug new/custom algorithms.
Author: Renaud Gaujoux
Maintainer: Renaud Gaujoux
Diff between NMF versions 0.2.4 dated 2010-01-12 and 0.3.1 dated 2010-02-08
NMF-0.2.4/NMF/R/fcnnls.R |only NMF-0.3.1/NMF/DESCRIPTION | 13 NMF-0.3.1/NMF/NAMESPACE | 6 NMF-0.3.1/NMF/NEWS | 48 NMF-0.3.1/NMF/R/Bioc-layer.R | 14 NMF-0.3.1/NMF/R/NMF-class.R | 186 NMF-0.3.1/NMF/R/NMFOffset-class.R | 6 NMF-0.3.1/NMF/R/NMFSet-class.R | 86 NMF-0.3.1/NMF/R/NMFStrategy-class.R | 86 NMF-0.3.1/NMF/R/NMFStrategyFunction-class.R | 10 NMF-0.3.1/NMF/R/NMFStrategyIterative-class.R | 289 NMF-0.3.1/NMF/R/NMFfit-class.R | 38 NMF-0.3.1/NMF/R/lnmf.R | 7 NMF-0.3.1/NMF/R/nmf-package.R | 84 NMF-0.3.1/NMF/R/nmf.R | 672 +- NMF-0.3.1/NMF/R/nndsvd.R | 2 NMF-0.3.1/NMF/R/options.R | 6 NMF-0.3.1/NMF/R/pe-nmf.R |only NMF-0.3.1/NMF/R/registry.R | 21 NMF-0.3.1/NMF/R/seed.R | 7 NMF-0.3.1/NMF/R/snmf.R | 208 NMF-0.3.1/NMF/R/utils.R | 20 NMF-0.3.1/NMF/inst/doc/NMF-vignette.Rnw | 1844 +++-- NMF-0.3.1/NMF/inst/doc/NMF-vignette.pdf | 8802 +++++++++++++++++---------- NMF-0.3.1/NMF/inst/matlab |only NMF-0.3.1/NMF/man/NMF-class.Rd | 46 NMF-0.3.1/NMF/man/NMF-defunct.Rd |only NMF-0.3.1/NMF/man/NMF-deprecated.Rd | 8 NMF-0.3.1/NMF/man/NMF-internals.Rd | 3 NMF-0.3.1/NMF/man/NMF-utils.Rd | 59 NMF-0.3.1/NMF/man/NMFOffset-class.Rd | 6 NMF-0.3.1/NMF/man/NMFfit-class.Rd | 26 NMF-0.3.1/NMF/man/NMFns-class.Rd | 1 NMF-0.3.1/NMF/man/NMFstd-class.Rd | 3 NMF-0.3.1/NMF/man/nmf-methods.Rd | 198 NMF-0.3.1/NMF/man/nmfEstimateRank.Rd | 30 36 files changed, 8520 insertions(+), 4315 deletions(-)
Title: Meta-Analysis for Correlations
Description: This is an integrated meta-analysis package for conducting
a research synthesis with correlational data. One of the unique
features of this package is in its integration of user-friendly
functions to complete all statistical steps involved in a meta-
analysis with correlations. It uses recommended procedures as
described in The Handbook of Research Synthesis and
Meta-Analysis (Cooper, Hedges, & Valentine, 2009).
Author: AC Del Re & William T. Hoyt
Maintainer: AC Del Re
Diff between MAc versions 1.0.1 dated 2010-02-06 and 1.0.2 dated 2010-02-08
DESCRIPTION | 24 ++++++++++++------------ R/MAc.R | 45 +++++++++++++++++++++++++++++++++++++++++++++ man/CatCompf.Rd | 11 +++++------ man/CatCompr.Rd | 10 +++++----- man/CatModGraph.Rd | 8 ++++---- man/CatModf.Rd | 14 ++++++++------ man/CatModfQ.Rd | 10 ++++++---- man/CatModr.Rd | 2 +- man/CatModrQ.Rd | 9 +++++---- man/ComplData.Rd | 12 +++++++----- man/CorAtten.rd |only man/ForestPlot.Rd | 9 +++++---- man/FunnelPlot.Rd | 8 ++++---- man/Kappa.Rd | 5 +++-- man/MAc-package.Rd | 38 ++++++++++++++++++++++---------------- man/MAreg1.Rd | 8 ++++---- man/MAreg2.Rd | 6 +++--- man/MAregGraph.Rd | 6 +++--- man/MetaR.Rd | 10 +++++++--- man/MultiModGraph.Rd | 12 +++++++----- man/OmnibusES.Rd | 10 +++++----- man/Rho_TU.Rd |only man/r_from_d.Rd | 9 +++++---- man/r_from_d1.Rd | 4 ++-- man/r_from_t.Rd | 7 ++++--- man/r_to_z.Rd | 10 +++++----- man/var_z.Rd | 8 ++++---- 27 files changed, 181 insertions(+), 114 deletions(-)
Amazon just alerted me to a new publication, Bayesian Methods in Cosmology. “Far out”.
Title: Perform SQL Selects on R Data Frames
Description: Manipulate R data frames using SQL.
Author: G. Grothendieck
Maintainer: G. Grothendieck
Diff between sqldf versions 0-3.2 dated 2010-02-01 and 0-3.3 dated 2010-02-07
DESCRIPTION | 8 ++++---- R/sqldf.R | 49 ++++++++++++++++++++++++++++++++++++++----------- inst/NEWS | 13 +++++++++++++ inst/THANKS | 2 ++ man/sqldf.Rd | 4 ++++ 5 files changed, 61 insertions(+), 15 deletions(-)
homebrew is a package management system for OS X that allows you to install various open source packages much like macports. Homebrew claims to simplify some aspects of the package mangement process, for example, by putting packages in /usr/local/Cellar/PKG and symlinking into /usr/local rather than relying on a custom package database. Another advantage is that it aims to reuse any software already installed on your Mac instead of taking a self-contained approach, like macports, where you end up needing a custom version many libraries you already have (the duplication of which can sometimes come back to bite you).
Anyhow, I'm just installing it now to give it a shot. Here's how I installed it using git archive. I thought this two liner was worth sharing:
sudo chown -R `whoami`:staff /usr/local
cd ~/src
git clone git://github.com/mxcl/homebrew.git
cd homebrew
git archive --format=tar HEAD|(cd /usr/local;tar xf -)
Update: Actually, to get more out of homebrew, you might actually want to turn your /usr/local directory into a homebrew git repository. So instead of the above, you really want this:
sudo chown -R `whoami`:staff /usr/local
cd /usr/local
git clone git://github.com/mxcl/homebrew.git .
If you plan on contributing new formulas or otherwise tweaking homebrew, you might consider first creating a fork of the main repo and cloning that into your /usr/local.
Title: H2 Database
Description: DBI interface to H2 database. H2 version 1.2.128 is
included.
Author: G. Grothendieck. Author of H2 is Thomas Mueller.
Maintainer: G. Grothendieck
Diff between RH2 versions 0.1-0 dated 2010-02-01 and 0.1-1 dated 2010-02-07
RH2-0.1-0/RH2/inst/h2.jar |only RH2-0.1-1/RH2/DESCRIPTION | 8 ++++---- RH2-0.1-1/RH2/NEWS |only RH2-0.1-1/RH2/R/class.R | 3 +-- RH2-0.1-1/RH2/inst/java |only RH2-0.1-1/RH2/man/H2.Rd | 4 ---- 6 files changed, 5 insertions(+), 10 deletions(-)
Title: Approximate Gaussian processes using the Fourier basis
Description: Routines for creating, manipulating, and performing
Bayesian inference about Gaussian processes in one and two
dimensions using the Fourier basis approximation: simulation
and plotting of processes, calculation of coefficient
variances, calculation of process density, coefficient
proposals (for use in MCMC). It uses R environments to store
GP objects as references/pointers.
Author: Chris Paciorek
Maintainer: Chris Paciorek
Diff between spectralGP versions 1.2 dated 2009-02-12 and 1.3 dated 2010-02-07
DESCRIPTION | 24 +++++++++++++----------- R/onLoad.R | 2 +- inst/CITATION | 10 ++++++---- man/Gibbs.sample.coeff.gp.Rd | 2 +- man/Hastings.coeff.gp.Rd | 2 +- man/add.blocks.gp.Rd | 5 +---- man/calc.variances.gp.Rd | 7 +------ man/change.param.gp.Rd | 8 +++----- man/copy.gp.Rd | 2 +- man/expand.gpgrid.gp.Rd | 5 +---- man/getgrid.gp.Rd | 5 +---- man/gp.Rd | 6 ++++-- man/image.plot.Rd | 8 +++----- man/lines.gp.Rd | 5 +---- man/logdensity.gp.Rd | 5 +---- man/lonlat2xy.Rd | 9 ++++----- man/matern.specdens.Rd | 7 ++----- man/new.mapping.Rd | 6 +----- man/plot.gp.Rd | 5 +---- man/points.gp.Rd | 5 +---- man/predict.gp.Rd | 7 +------ man/print.gp.Rd | 2 +- man/propose.coeff.gp.Rd | 6 ++---- man/simulate.gp.Rd | 6 +----- man/spectralGP.Rd | 5 ----- man/updateprocess.gp.Rd | 5 +---- man/xy2unit.Rd | 9 ++++----- man/zero.coeff.gp.Rd | 7 +------ 28 files changed, 59 insertions(+), 116 deletions(-)
Title: Sequential (or Safe) Implementation of Monte Carlo tests with
uniformly bounded resampling risk.
Description: Efficient computation of p-values for Monte Carlo tests,
e.g. bootstrap tests. The algorithm provides a uniform bound on
the resampling risk.
Author: Axel Gandy
Maintainer: Axel Gandy
Diff between simctest versions 1.0-0 dated 2009-05-28 and 1.0-1 dated 2010-02-07
DESCRIPTION | 10 +++++----- inst/CITATION | 9 +++++---- inst/doc/simctest-intro.pdf |binary man/confint-methods.Rd | 2 +- man/getL-methods.Rd | 2 +- man/getU-methods.Rd | 2 +- man/getalgprecomp.Rd | 2 +- man/run-methods.Rd | 4 ++-- man/sampalgPrecomp-class.Rd | 2 +- man/sampalgontheflyres-class.Rd | 1 - man/simctest.Rd | 4 ++-- 11 files changed, 19 insertions(+), 19 deletions(-)
Title: Statistics for psychiatric research
Description: The rpsychi offers a number of functions for psychiatry,
psychiatric nursing, clinical psychology. Functions are
primarily for statistical significance testing using published
work. For example, you can conduct a factorial analysis of
variance (ANOVA), which requires only the mean, standard
deviation, and sample size for each cell, rather than the
individual data. This package covers fundamental statistical
tests such as t-test, chi-square test, analysis of variance,
and multiple regression analysis. With some exceptions, you can
obtain effect size and its confidence interval. These functions
help you to obtain effect size from published work, and then to
conduct a priori power analysis or meta-analysis, even if a
researcher do not report effect size in a published work.
Author: Yasuyuki Okumura
Maintainer: Yasuyuki Okumura
Diff between rpsychi versions 0.0 dated 2010-02-05 and 0.1 dated 2010-02-07
DESCRIPTION | 8 ++++---- NEWS |only R/dep.t.test.R | 7 ++++--- R/ind.twoway.second.R |only R/power.f2.R |only man/dep.t.test.Rd | 7 +++++-- man/ind.twoway.second.Rd |only man/power.f.Rd | 3 +-- man/power.f2.Rd |only man/rpsychi-package.Rd | 9 ++++++--- 10 files changed, 20 insertions(+), 14 deletions(-)
Title: A graphical user interface for data mining in R using GTK
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data
mining. The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file (or via
ODBC), transform and explore the data, build and evaluate
models, and export models as PMML (predictive modelling markup
language) or as scores. All of this with knowing little about
R. All R commands are logged and commented through the log tab
and so available to the user as a script file or as an aide to
the user to interact directly with R itself. Rattle also
exports a number of utility functions and the graphical user
interface, invoked as rattle(), does not need to be run to
deploy these.
Author: Graham Williams
Maintainer: Graham Williams
Diff between rattle versions 2.5.20 dated 2010-01-31 and 2.5.21 dated 2010-02-07
DESCRIPTION | 12 +++++------ R/evaluate.R | 28 ++++++++++++++++++-------- R/explore.R | 42 ++++++++++++++++++++++++++++------------ R/hclust.R | 52 +++++++++++++++++++++++++------------------------- R/rattle.R | 12 +++++------ R/rpart.R | 14 ++++++------- data/weather.RData |binary data/weatherAUS.RData |binary data/wine.RData |only inst/ChangeLog | 19 ++++++++++++++++++ inst/INSTALL |only man/weather.Rd | 25 +++++++++++++++--------- man/wine.Rd |only 13 files changed, 130 insertions(+), 74 deletions(-)
Title: Decimal log plotting in two and three dimensions
Description: Provides a range of function for 10-log plotting
Author: Timothee Poisot
Maintainer: Timothee Poisot
Diff between log10 versions 0.1.0-01 dated 2009-11-26 and 0.1.0-03 dated 2010-02-07
DESCRIPTION | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-)
Title: Inequality constrained inference in linear normal situations
Description: This package implements parameter estimation in normal
(linear) models under linear equality and inequality
constraints and implements normal likelihood ratio tests
involving inequality-constrained hypotheses. For
inequality-constrained linear models, averaging over R-squared
for different orderings of regressors is also included.
Author: Ulrike Groemping
Maintainer: Ulrike Groemping
Diff between ic.infer versions 1.1-1 dated 2009-12-20 and 1.1-2 dated 2010-02-07
DESCRIPTION | 8 ++++---- R/summary.ict.R | 6 +++--- R/summary.orlm.R | 8 ++++---- inst/CITATION |only inst/NEWS | 5 +++++ inst/doc |only man/ic.infer-package.rd | 14 +++++++++++--- 7 files changed, 27 insertions(+), 14 deletions(-)
Title: Model selection and multimodel inference based on (Q)AIC(c)
Description: This package includes functions to create model selection
tables based on Akaike's information criterion (AIC) and the
second-order AIC (AICc), as well as their quasi-likelihood
counterparts (QAIC, QAICc). Tables are printed with delta AIC
and Akaike weights. The package also includes functions to
conduct model averaging (multimodel inference) for a given
parameter of interest or predicted values. Other handy
functions enable the computation of relative variable
importance, evidence ratios, and confidence sets for the best
model. The present version works with linear models ('lm'
class), generalized linear models ('glm' class), linear models
fit by generalized least squares ('gls' class), linear mixed
models ('lme' class), multinomial and ordinal logistic
regressions ('multinom' and 'polr' classes).
Author: Marc J. Mazerolle . Special thanks to
T. Ergon for the original idea of storing candidate models in a
list.
Maintainer: Marc J. Mazerolle
Diff between AICcmodavg versions 1.05 dated 2009-12-06 and 1.06 dated 2010-02-07
DESCRIPTION | 11 - R/AICc.R | 38 ++-- R/AICc.glm.R | 3 R/AICc.gls.R |only R/aictab.R | 29 ++- R/aictab.glm.R | 5 R/aictab.gls.R |only R/aictab.lme.R | 5 R/aictab.mult.R | 5 R/aictab.polr.R | 5 R/confset.R | 5 R/evidence.R | 31 ++- R/importance.R | 4 R/modavg.R | 38 ++-- R/modavg.glm.R | 2 R/modavg.gls.R |only R/modavg.lme.R | 7 R/modavgpred.R | 433 +++++++++++++++++++++++++++++++--------------- R/predictSE.lme.r |only inst/NEWS |only man/AICc.Rd | 42 ++-- man/AICcmodavg-package.Rd | 13 - man/aictab.Rd | 36 ++- man/confset.Rd | 9 man/evidence.Rd | 52 +++-- man/importance.Rd | 10 - man/modavg.Rd | 37 ++- man/modavgpred.Rd | 49 +++-- man/predictSE.lme.Rd |only 29 files changed, 585 insertions(+), 284 deletions(-)
Title: Distance and Similarity Measures
Description: Provides an extensible framework for the effcient
calculation of auto- and cross-proximities, along with
implementations of the most popular ones.
Author: David Meyer and Christian Buchta
Maintainer: David Meyer
Diff between proxy versions 0.4-5 dated 2009-11-05 and 0.4-6 dated 2010-02-06
DESCRIPTION | 8 ++++---- NEWS | 8 ++++++++ R/util.R | 10 +++++++--- inst/NEWS | 8 ++++++++ inst/doc/overview.pdf |binary 5 files changed, 27 insertions(+), 7 deletions(-)
Title: WA, WA-PLS, MW for paleolimnology
Description: This package contains functions for paleolimnology -
wa-regression (see also package analogue by G. Simpson!),
wa-pls and the mowing-window approch. The function palplot
allows a first plot of the data including a trend analysis. The
mtf function is just a first test version.
Author: Sven Adler
Maintainer: Sven Adler
Diff between paltran versions 1.2-0 dated 2009-07-18 and 1.3-0 dated 2010-02-06
paltran-1.2-0/paltran/R/mft.R |only paltran-1.2-0/paltran/man/mft.Rd |only paltran-1.3-0/paltran/DESCRIPTION | 10 - paltran-1.3-0/paltran/R/mtf.R |only paltran-1.3-0/paltran/R/mw.R | 237 +++++++++++++++++++++++++-- paltran-1.3-0/paltran/R/palplot.R | 1 paltran-1.3-0/paltran/R/rand.test.R |only paltran-1.3-0/paltran/R/wa.R | 43 ++-- paltran-1.3-0/paltran/R/wapls.R | 41 ++-- paltran-1.3-0/paltran/man/mtf.Rd |only paltran-1.3-0/paltran/man/mw.Rd | 31 ++- paltran-1.3-0/paltran/man/paltran-package.Rd | 7 paltran-1.3-0/paltran/man/rand.test.Rd |only paltran-1.3-0/paltran/man/wa.Rd | 9 - 14 files changed, 311 insertions(+), 68 deletions(-)
Title: Object Oriented Statistical Programming
Description: A platform and collection of tools for, object oriented
statistical programming, with special emphasis on R/S3 language
extensions, including extensions for environment-based
programming and object-functional programming. Note that many
of the features in this package are experimental.
Author: Charlotte Maia
Maintainer: Charlotte Maia
Diff between oosp versions 0.3.1 dated 2010-01-29 and 0.3.2 dated 2010-02-06
DESCRIPTION | 12 ++++++------ inst/doc/oosp1.pdf |binary inst/doc/oosp1.rnw | 4 ++-- inst/doc/oosp2.pdf |binary inst/doc/oosp2.rnw | 6 +++--- inst/doc/oosp3.pdf |binary inst/doc/oosp3.rnw | 4 ++-- 7 files changed, 13 insertions(+), 13 deletions(-)
Title: Multivariate partitioning
Description: Multivariate regression trees
Author: rpart by Terry M Therneau and Beth Atkinson
. R port of rpart by Brian Ripley
. Some routines from vegan -- Jari
Oksanen Extensions and adaptations of
rpart to mvpart by Glenn De'ath .
Maintainer: Glenn De'ath
Diff between mvpart versions 1.2-6 dated 2007-10-12 and 1.3-0 dated 2010-02-06
mvpart-1.2-6/mvpart/LICENCE |only mvpart-1.3-0/mvpart/DESCRIPTION | 31 ++++++----- mvpart-1.3-0/mvpart/INDEX | 81 +++++++++++++++---------------- mvpart-1.3-0/mvpart/LICENSE |only mvpart-1.3-0/mvpart/R/mvpart.R | 2 mvpart-1.3-0/mvpart/R/rpart.pca.R | 4 - mvpart-1.3-0/mvpart/ToDos |only mvpart-1.3-0/mvpart/man/cmds.diss.Rd | 2 mvpart-1.3-0/mvpart/man/gdist.Rd | 4 - mvpart-1.3-0/mvpart/man/mvpart.Rd | 2 mvpart-1.3-0/mvpart/man/predict.rpart.Rd | 2 mvpart-1.3-0/mvpart/man/rpart.Rd | 4 - mvpart-1.3-0/mvpart/man/rpart.control.Rd | 2 mvpart-1.3-0/mvpart/man/rpart.pca.Rd | 4 - mvpart-1.3-0/mvpart/man/trclcomp.Rd | 5 - 15 files changed, 73 insertions(+), 70 deletions(-)
Title: Export R objects to several markup languages
Description: Coerce R object to asciidoc, txt2tags, restructuredText or
org syntax. Package comes with a set of drivers for Sweave.
Author: David Hajage
Maintainer: David Hajage
Diff between ascii versions 0.4-2 dated 2009-11-29 and 0.5 dated 2010-02-06
DESCRIPTION | 6 - NAMESPACE | 2 NEWS | 10 ++ R/RweaveAsciidoc.r | 2 R/RweaveOrg.r | 4 - R/RweaveReST.r | 2 R/RweaveT2t.r | 2 R/RweaveTextile.r |only R/SweaveAscii.r | 3 R/misc.r | 78 +++++++++++++++----- R/print.r | 1 R/show.r | 192 +++++++++++++++++++++++++++++++++++++++++---------- man/RweaveTextile.Rd |only man/Textile.Rd |only man/ascii.Rd | 2 man/print.ascii.Rd | 7 + 16 files changed, 245 insertions(+), 66 deletions(-)
Title: Additive Models for Business Applications
Description: An incomplete package for using additive models in
business. The models (currently) emphasize semiparametric
models (predictors), interpretation and missing explanatory
values.
Author: Charlotte Maia
Maintainer: Charlotte Maia
Diff between amba versions 0.2.0 dated 2009-11-20 and 0.2.1 dated 2010-02-06
DESCRIPTION | 20 +++++++++----------- R/estimators.r | 1 + inst/doc/amba.pdf |binary inst/doc/amba.rnw | 4 ++-- man/Estimation.Rd | 21 +++++++++++---------- man/amba.Rd | 5 +++-- man/ambax.Rd | 3 ++- man/categorical.Rd | 9 +++++---- man/clean.Rd | 5 +++-- man/eqnp.Rd | 9 +++++---- man/evaluate.amba.Rd | 7 ++++--- man/evaluate.term.Rd | 3 ++- man/fit.term.Rd | 9 +++++---- man/gf.Rd | 15 ++++++++------- man/interaction.Rd | 13 +++++++------ man/interceptadj.Rd | 7 ++++--- man/linear.Rd | 15 ++++++++------- man/linear.design.Rd | 7 ++++--- man/linear.estimate.Rd | 3 ++- man/linear.expand.Rd | 7 ++++--- man/linear.matrix.Rd | 5 +++-- man/mmba.Rd | 13 +++++++------ man/mutate.term.Rd | 7 ++++--- man/plots.Rd | 9 +++++---- man/polynomial.Rd | 11 ++++++----- man/rawestimate.Rd | 5 +++-- man/reset.Rd | 5 +++-- man/seq.term.Rd | 6 +++--- man/setestimation.Rd | 9 +++++---- man/smooth.Rd | 7 ++++--- man/smooth.design.Rd | 13 +++++++------ man/smooth.estimate.Rd | 11 ++++++----- man/summary.term.Rd | 11 ++++++----- man/term.Rd | 3 ++- man/term.label.Rd | 3 ++- man/term.pcd.Rd | 7 ++++--- man/term.pump.Rd | 7 ++++--- man/term.validate.Rd | 3 ++- man/termlist.Rd | 13 +++++++------ man/validex.Rd | 3 ++- man/wf.Rd | 7 ++++--- 41 files changed, 178 insertions(+), 143 deletions(-)
Title: Meta-Analysis for Correlations
Description: This is an integrated meta-analysis package for conducting
a research synthesis with correlations. The unique feature of
this package is that there are user-friendly functions for
completing all statistical steps involved in a meta-analysis.
It uses recommended procedures as described in Cooper, Hedges,
& Valentine's Handbook of Research Synthesis and Meta-Analysis
(2009).
Author: AC Del Re & William T. Hoyt University of Wisconsin-Madison
Maintainer: AC Del Re
Diff between MAc versions 1.0 dated 2010-02-04 and 1.0.1 dated 2010-02-06
MAc-1.0.1/MAc/DESCRIPTION | 21 +++++---- MAc-1.0.1/MAc/R/MAc.R | 79 +++++++++++++++++++++++++++++++++++-- MAc-1.0.1/MAc/man/CatCompf.Rd | 6 +- MAc-1.0.1/MAc/man/CatCompr.Rd | 4 - MAc-1.0.1/MAc/man/CatModGraph.Rd | 6 +- MAc-1.0.1/MAc/man/CatModfQ.Rd | 2 MAc-1.0.1/MAc/man/CatModr.Rd | 30 +++++++++++++- MAc-1.0.1/MAc/man/CatModrQ.Rd | 2 MAc-1.0.1/MAc/man/ComplData.Rd | 3 - MAc-1.0.1/MAc/man/ForestPlot.Rd | 2 MAc-1.0.1/MAc/man/FunnelPlot.Rd | 4 - MAc-1.0.1/MAc/man/Kappa.Rd | 2 MAc-1.0.1/MAc/man/MAc-package.Rd | 29 ++++++------- MAc-1.0.1/MAc/man/MAreg1.Rd | 4 - MAc-1.0.1/MAc/man/MAreg2.Rd | 11 +++-- MAc-1.0.1/MAc/man/MAregGraph.Rd | 9 ++-- MAc-1.0.1/MAc/man/MetaR.Rd | 2 MAc-1.0.1/MAc/man/MultiModGraph.Rd |only MAc-1.0.1/MAc/man/OmnibusES.Rd | 4 - MAc-1.0.1/MAc/man/qrs.Rd |only MAc-1.0/MAc/man/qr.Rd |only 21 files changed, 163 insertions(+), 57 deletions(-)
Title: Cox models by likelihood based boosting for a single survival
endpoint or competing risks
Description: This package provides routines for fitting Cox models by
likelihood based boosting for a single endpoint or in presence
of competing risks
Author: Harald Binder
Maintainer: Harald Binder
Diff between CoxBoost versions 1.1 dated 2009-02-15 and 1.2 dated 2010-02-06
DESCRIPTION | 13 ++++-- NAMESPACE | 2 - R/CoxBoost.R | 89 +++++++++++++++++++++++++++++++++------------ R/estimPVal.R |only changeLog | 12 ++++++ man/CoxBoost.Rd | 5 +- man/estimPVal.Rd |only man/optimStepSizeFactor.Rd | 2 - src/find_best.c | 31 +++++++++++++++ 9 files changed, 123 insertions(+), 31 deletions(-)
The sequel to Mass Effect has arrived and after about 10 days with the game I can honestly say that on virtually every dimension, ME2 is superior to its predecessor. Combat has been made a lot better; the decryption and electronics “mini-games” are much more engaging than playing Simon with the A-B-Y-Z buttons on the controller; and the voice acting and animation is a step up from the original. Overall the game definitely is more polished than its predecessor and feels more complete. After a short adjustment to the “new” rules of the ME universe, I found I really didn’t miss the elements of gameplay that were reduced or simplified.
Comparing two play-throughs of the game based on different saves from ME1, I could definitely feel a more ominous sense of Things To Come based on the differences in my actions in the two “pasts”; the consequences of past actions do not affect the main plot of ME2 drastically, but I have the sense that some of Shepard’s actions in the fight against Saren and Sovereign in ME1 will have major consequences in the third installment, as well as Shepard’s actions in ME2 of course.
ME2 definitely reflects its creators’ intentions to have a “darker” middle section of the trilogy; in particular, the lines of morality are blurred much more than in ME1 (where the only arguably morally-dubious “Paragon” choice was the decision to free the last of the rachni), and certainly what might be good for the galaxy doesn’t always align with what is right for Shepard. In the various missions you have to wrestle with the morality of taking actions to rectify past morally-dubious actions by others. If one faction seeks to impose its vision of Truth on another, is it morally acceptable to turn the tables on them and impose a different vision? Should a species that was mistakenly “elevated” without its consent be hobbled until that species’ people can mature sufficiently to deal with the technological advances that fell in their laps? Should a major piece of enemy technology be left intact for one particular race’s ethically-challenged black ops organization to discover its secrets, perhaps to be used not against the civilized galaxy’s common foe but for more immediate political advantage?
I would be remiss if I didn’t also discuss the humor that Bioware stuck in the game, including (but not limited to) self-deprecation about the excruciating elevator rides in ME1, a 22nd century take on Dirty Harry, an alien scientist who performs Gilbert and Sullivan, and ads for probably the worst production of Hamlet in recorded history. I laughed myself silly several times during the game; sometimes, it was because of something Shepard did (or a squadmate’s response to it), while other times it was just something bizarre overheard in the background—random banter between bystanders, for example.
My only quibbles thus far would be with the planet scanning part of the game (I don’t mind having to gather resources, but you’d think your multi-billion credit starship’s AI could scan for minerals on its own much faster than I could), the inability to revisit some of the interesting locations from ME1 (leading to some rather improbable coincidental encounters with important folks from those locations at other ports-of-call), and a sense that some locations just needed to be grander in scope—even some of the interesting places you visit are sealed once you complete missions in those areas, so you can’t really go and see what difference your actions made. I also miss a bit of the “party banter” from the previous game; given the much larger combination of squadmates possible for missions (and the lack of elevator rides for banter to take place), however, it’s understandable.
But the quibbles are more than offset by the positives of the game. ME2 was definitely top value for my entertainment dollar.
Now open for registrations:
R / Finance 2010: Applied Finance with R
April 16 and 17, 2010
Chicago, IL, USA
The second annual R / Finance conference for applied finance using R, the premier free software system for statistical computation and graphics, will be held this spring in Chicago, IL, USA on Friday April 16 and Saturday April 17.
Building on the success of the inaugural R / Finance 2009 event, this two-day conference will cover topics as diverse as portfolio theory, time-series analysis, as well as advanced risk tools, high-performance computing, and econometrics. All will be discussed within the context of using R as a primary tool for financial risk management and trading.
Invited keynote presentations by Bernhard Pfaff, Ralph Vince, Mark Wildi and Achim Zeileis are complemented by over twenty talks (both full-length and 'lightning') selected from the submissions. Four optional tutorials are also offered on Friday April 16.
R / Finance 2010 is organized by a local group of R package authors and community contributors, and hosted by the International Center for Futures and Derivatives (ICFD) at the University of Illinois at Chicago.
Conference registration is now open. Special advanced registration pricing is available, as well as discounted pricing for academic and student registrations.
More details and registration information can be found at the website at
http://www.RinFinance.com
For the program committee:
Gib Bassett, Peter Carl, Dirk Eddelbuettel, John Miller,
Brian Peterson, Dale Rosenthal, Jeffrey Ryan
See you in Chicago in April!
Title: An interface for creating GUIs modeled in part after traits UI
module for python.
Description: An interface for creating GUIs modeled in part after the
traits UI module for python. The basic design takes advantage
of the model-view-controller design pattern. The interface
makes basic dialogs quite easy to produce.
Author: John Verzani
Maintainer: John Verzani
Diff between traitr versions 0.4 dated 2010-02-03 and 0.5 dated 2010-02-05
ChangeLog | 5 +++++ DESCRIPTION | 6 +++--- NEWS | 8 ++++++++ R/items.R | 13 +++++++++---- inst/doc/traitr.pdf |binary man/choiceItem.Rd | 4 ++-- 6 files changed, 27 insertions(+), 9 deletions(-)
Title: Racing methods for the selection of the best
Description: Implementation of some racing methods for the empirical
selection of the best. If the R package `rpvm' is installed
(and if PVM is available, properly configured, and
initialized), the evaluation of the candidates are performed in
parallel on different hosts.
Author: Mauro Birattari
Maintainer: Mauro Birattari
Diff between race versions 0.1.56 dated 2005-04-01 and 0.1.58 dated 2010-02-05
race-0.1.56/race/INDEX |only race-0.1.56/race/TODO |only race-0.1.56/race/debian |only race-0.1.58/race/DESCRIPTION | 19 +++++++++++-------- race-0.1.58/race/R/race.R | 8 ++++---- race-0.1.58/race/inst/examples/example-wrapper.R | 2 -- race-0.1.58/race/inst/slave/srace.sh | 2 -- race-0.1.58/race/man/race.Rd | 2 -- race-0.1.58/race/man/race.describe.Rd | 18 ++++++------------ race-0.1.58/race/man/race.info.Rd | 16 +++++----------- race-0.1.58/race/man/race.init.Rd | 20 +++++++------------- race-0.1.58/race/man/race.wrapper.Rd | 15 +++++---------- 12 files changed, 38 insertions(+), 64 deletions(-)
Title: Dive analysis and calibration
Description: Utilities to represent, visualize, filter, analyse, and
summarize time-depth recorder (TDR) data. Miscellaneous
functions for handling location data are also provided.
Author: Sebastian P. Luque
Maintainer: Sebastian P. Luque
Diff between diveMove versions 0.9.6 dated 2009-10-21 and 0.9.7 dated 2010-02-05
ChangeLog | 45 DESCRIPTION | 15 NAMESPACE | 2 R/AllClass.R | 2 R/AllGenerics.R | 2 R/AllMethod.R | 2 R/austFilter.R | 2 R/bouts.R | 2 R/calibrate.R | 2 R/detDive.R | 2 R/detPhase.R | 2 R/distSpeed.R | 2 R/diveStats.R | 2 R/oneDiveStats.R | 2 R/plotTD.R | 2 R/readLocs.R | 2 R/readTDR.R | 12 R/speedStats.R | 2 R/stampDive.R | 2 R/zoc.R | 2 R/zzz.R | 2 README | 9 data/dives.csv |68400 +++++++++++++++++++++--------------------- data/sealLocs.csv | 740 inst/doc/Makefile | 2 inst/doc/diveMove.Rnw | 14 inst/doc/diveMove.pdf | 6279 ++- man/TDR-accessors.Rd | 2 man/TDR-class.Rd | 2 man/TDRcalibrate-accessors.Rd | 2 man/TDRcalibrate-class.Rd | 2 man/austFilter.Rd | 4 man/bout-methods.Rd | 2 man/bout-misc.Rd | 2 man/bouts2MLE.Rd | 2 man/bouts2NLS.Rd | 2 man/calibrateDepth.Rd | 2 man/calibrateSpeed.Rd | 2 man/detDive-internal.Rd | 2 man/detPhase-internal.Rd | 2 man/distSpeed.Rd | 4 man/diveMove-internal.Rd | 2 man/diveMove-package.Rd | 5 man/diveStats.Rd | 2 man/dives.Rd | 14 man/extractDive-methods.Rd | 2 man/labDive-internal.Rd | 2 man/plotTDR-methods.Rd | 2 man/readLocs.Rd | 8 man/readTDR.Rd | 14 man/rqPlot.Rd | 2 man/sealLocs.Rd | 9 man/timeBudget-methods.Rd | 2 man/zoc.Rd | 2 tests/calibrations.R | 9 tests/class-tests.R | 13 tests/final-stats.R | 12 57 files changed, 38070 insertions(+), 37614 deletions(-)
Title: Benchmark dose analysis for dose-response data
Description: Benchmark dose analysis for continuous and quantal
dose-response data.
Author: Christian Ritz
Maintainer: Christian Ritz
Diff between bmd versions 0.1 dated 2008-06-05 and 0.2 dated 2010-02-05
DESCRIPTION | 29 ++++++++++++++++------------- inst/CITATION | 7 ++++--- 2 files changed, 20 insertions(+), 16 deletions(-)
Title: R interface to the yacas computer algebra system
Description: An interface to the yacas computer algebra system.
Author: Rob Goedman , Gabor Grothendieck
, Sшren Hшjsgaard
, Ayal Pinkus
Maintainer: G. Grothendieck
Diff between Ryacas versions 0.2-9 dated 2009-03-03 and 0.2-10 dated 2010-02-05
DESCRIPTION | 30 INSTALL |only R/Num.R |only R/OpenMath2R.R | 3 R/yacas.R | 7 inst/NEWS | 8 inst/doc/Ryacas.pdf | 2613 ++++++++++++++++++++++++++++------------------------ 7 files changed, 1446 insertions(+), 1215 deletions(-)
Title: Sparse and Dense Matrix Classes and Methods
Description: Classes and methods for dense and sparse matrices and
operations on them using Lapack and SuiteSparse.
Author: Douglas Bates and Martin Maechler
Maintainer: Doug and Martin
Diff between Matrix versions 0.999375-36 dated 2010-02-04 and 0.999375-37 dated 2010-02-05
ChangeLog | 12 DESCRIPTION | 8 R/Csparse.R | 44 +-- TODO | 2 inst/doc/Comparisons.pdf |binary inst/doc/Design-issues.pdf |binary inst/doc/Intro2Matrix.pdf | 587 ++++++++++++++++++++++----------------------- inst/doc/Introduction.pdf |binary inst/doc/sparseModels.pdf |binary inst/test-tools.R | 28 +- src/Csparse.c | 22 + tests/indexing.R | 29 +- tests/indexing.Rout.save | 429 ++++++++++++++++++-------------- 13 files changed, 629 insertions(+), 532 deletions(-)
Title: Geographically weighted regression
Description: Functions for computing geographically weighted
regressions based on work by Chris Brunsdon, Martin Charlton
and Stewart Fortheringham, http://ncg.nuim.ie/ncg/GWR/index.htm
Author: Roger Bivand and Danlin Yu, contributions by Tomoki Nakaya,
tricube function based on a contribution by Miquel-Angel
Garcia-Lopez
Maintainer: Roger Bivand
Diff between spgwr versions 0.6-2 dated 2009-06-26 and 0.6-4 dated 2010-02-05
ChangeLog | 13 +++++++++++-- DESCRIPTION | 14 ++++++++------ INDEX | 1 + R/gwr.R | 12 ++++++------ R/tricube.R |only inst/ChangeLog | 22 ++++++++++++++++++++-- man/gwr.tricube.Rd |only 7 files changed, 46 insertions(+), 16 deletions(-)
Title: Spatial dependence: weighting schemes, statistics and models
Description: A collection of functions to create spatial weights matrix
objects from polygon contiguities, from point patterns by
distance and tesselations, for summarising these objects, and
for permitting their use in spatial data analysis, including
regional aggregation by minimum spanning tree; a collection of
tests for spatial autocorrelation, including global Moran's I,
APLE, Geary's C, Hubert/Mantel general cross product statistic,
Empirical Bayes estimates and Assunзгo/Reis Index, Getis/Ord G
and multicoloured join count statistics, local Moran's I and
Getis/Ord G, saddlepoint approximations and exact tests for
global and local Moran's I; and functions for estimating
spatial simultaneous autoregressive (SAR) lag and error models,
impact measures for lag models, weighted and unweighted SAR and
CAR spatial regression models, semi-parametric and Moran
eigenvector spatial filtering, GM SAR error models, and
generalized spatial two stage least squares models.
Author: Roger Bivand , with contributions by Luc
Anselin, Renato Assunзгo, Olaf Berke, Andrew Bernat, Eric
Blankmeyer, Marilia Carvalho, Yongwan Chun, Bjarke Christensen,
Carsten Dormann, Stйphane Dray, Rein Halbersma, Elias Krainski,
Nicholas Lewin-Koh, Hongfei Li, Jielai Ma, Giovanni Millo,
Werner Mueller, Hisaji Ono, Pedro Peres-Neto, Gianfranco Piras,
Markus Reder, Michael Tiefelsdorf, and Danlin Yu.
Maintainer: Roger Bivand
Diff between spdep versions 0.4-56 dated 2009-12-18 and 0.4-58 dated 2010-02-05
ChangeLog | 15 DESCRIPTION | 20 - INDEX | 5 NAMESPACE | 15 R/globalG.R | 3 R/mess.R |only R/summary.spsarlm.R | 4 inst/ChangeLog | 15 inst/doc/CO69.pdf |binary inst/doc/sids.pdf | 964 +++++++++++++++++++++++++--------------------------- man/globalG.test.Rd | 6 man/lagmess.Rd |only man/skater.Rd | 2 man/ssw.Rd | 2 14 files changed, 542 insertions(+), 509 deletions(-)
Title: Control Charts, Capability and Distribution Identification
Description: qAnalyst performs: control charts for variables and
attributes according to Douglas C. Montgomery Introduction to
Statistical Quality Control book, Capability analysis for
normal and non - normal distributions and Distributions
Identification
Author: Andrea Spano'
Maintainer: Andrea Spano'
Diff between qAnalyst versions 0.6.1 dated 2010-01-27 and 0.6.2 dated 2010-02-05
DESCRIPTION | 8 - R/plot.spc.R | 4 R/spc.R | 9 - R/testFun.R | 335 +++++++++++++++++++++++---------------------- README | 5 man/brakeCap.Rd | 3 man/capabilityNormal.Rd | 6 man/capabilityNotNormal.Rd | 6 man/probplot.Rd | 6 man/qAnalyst-package.Rd | 33 ++-- man/spc.Rd | 65 ++++---- man/summary.capability.Rd | 5 man/testFun.Rd | 36 ++-- man/toys.Rd | 3 man/tubes.Rd | 3 15 files changed, 287 insertions(+), 240 deletions(-)
Bioconductor Project Working Papers
Blogistic Reflections
CRANberries
Chris Lawrence
DataCritica: International Journal of Critical Statistics
Dirk Eddelbuettel
GGobi blog
Gregor Gorjanc
Journal of Statistical Software
Journal of the Royal Statistical Society: Series A
Journal of the Royal Statistical Society: Series B
Journal of the Royal Statistical Society: Series C
Omegahat
R Development NEWS
R Graph Gallery
R you ready?
Revolutions
Romain Francois
Seth Falcon
Simon Jackman
Statistical Computing Matters
Statistical Computing and Software
Statistical Modelling
worldofrcraft
Last updated:
February 09, 2010 11:04 AM
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