Author: Jari Oksanen, Roeland Kindt, Pierre Legendre, Bob O'Hara, Gavin L. Simpson,
M. Henry H. Stevens
Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other
functions for community and vegetation ecologists.
Diff between vegan versions 1.11-4 dated 2008-04-24 and 1.13-0 dated 2008-05-21
vegan-1.11-4/vegan/R/ordispantree.R |only vegan-1.11-4/vegan/R/permDisper.R |only vegan-1.11-4/vegan/R/print.permDisper.R |only vegan-1.13-0/vegan/DESCRIPTION | 11 vegan-1.13-0/vegan/R/TukeyHSD.betadisper.R |only vegan-1.13-0/vegan/R/adonis.R | 21 + vegan-1.13-0/vegan/R/betadisper.R | 8 vegan-1.13-0/vegan/R/betadiver.R |only vegan-1.13-0/vegan/R/biplot.rda.R | 36 +- vegan-1.13-0/vegan/R/capscale.R | 24 + vegan-1.13-0/vegan/R/designdist.R | 14 vegan-1.13-0/vegan/R/lines.spantree.R | 6 vegan-1.13-0/vegan/R/metaMDS.R | 8 vegan-1.13-0/vegan/R/metaMDSdist.R | 2 vegan-1.13-0/vegan/R/mso.R |only vegan-1.13-0/vegan/R/nestedtemp.R |only vegan-1.13-0/vegan/R/ordiArgAbsorber.R |only vegan-1.13-0/vegan/R/ordiTerminfo.R | 6 vegan-1.13-0/vegan/R/ordiarrows.R | 14 vegan-1.13-0/vegan/R/ordicluster.R | 5 vegan-1.13-0/vegan/R/ordiellipse.R | 29 - vegan-1.13-0/vegan/R/ordihull.R | 10 vegan-1.13-0/vegan/R/ordisegments.R | 9 vegan-1.13-0/vegan/R/ordispider.R | 11 vegan-1.13-0/vegan/R/orditkplot.R | 106 ++++++ vegan-1.13-0/vegan/R/orditorp.R | 45 +- vegan-1.13-0/vegan/R/permute.R |only vegan-1.13-0/vegan/R/permutest.betadisper.R |only vegan-1.13-0/vegan/R/permutest.cca.R | 6 vegan-1.13-0/vegan/R/plot.betadiver.R |only vegan-1.13-0/vegan/R/plot.cca.R | 2 vegan-1.13-0/vegan/R/plot.mso.R |only vegan-1.13-0/vegan/R/plot.nestedtemp.R |only vegan-1.13-0/vegan/R/points.decorana.R | 5 vegan-1.13-0/vegan/R/print.capscale.R |only vegan-1.13-0/vegan/R/print.metaMDS.R | 9 vegan-1.13-0/vegan/R/print.nestedtemp.R |only vegan-1.13-0/vegan/R/print.permutest.betadisper.R |only vegan-1.13-0/vegan/R/print.summary.cca.R | 7 vegan-1.13-0/vegan/R/rarefy.R | 17 - vegan-1.13-0/vegan/R/rgl.isomap.R |only vegan-1.13-0/vegan/R/scores.betadiver.R |only vegan-1.13-0/vegan/R/screeplot.cca.R | 11 vegan-1.13-0/vegan/R/screeplot.decorana.R | 3 vegan-1.13-0/vegan/R/screeplot.prcomp.R | 11 vegan-1.13-0/vegan/R/screeplot.princomp.R | 11 vegan-1.13-0/vegan/R/specaccum.R | 9 vegan-1.13-0/vegan/R/summary.cca.R | 4 vegan-1.13-0/vegan/R/text.decorana.R | 12 vegan-1.13-0/vegan/R/zzz.R | 7 vegan-1.13-0/vegan/inst/ChangeLog | 341 +++++++++++++++++++--- vegan-1.13-0/vegan/inst/NEWS | 68 ++++ vegan-1.13-0/vegan/inst/doc/FAQ-vegan.pdf |binary vegan-1.13-0/vegan/inst/doc/FAQ-vegan.texi | 1 vegan-1.13-0/vegan/inst/doc/Makefile | 2 vegan-1.13-0/vegan/inst/doc/decision-vegan.Rnw | 152 +++++++++ vegan-1.13-0/vegan/inst/doc/decision-vegan.pdf |binary vegan-1.13-0/vegan/inst/doc/decision-vegan.tex | 170 +++++++++- vegan-1.13-0/vegan/inst/doc/diversity-vegan.Rnw | 32 +- vegan-1.13-0/vegan/inst/doc/diversity-vegan.pdf |binary vegan-1.13-0/vegan/inst/doc/diversity-vegan.tex | 138 +++++--- vegan-1.13-0/vegan/inst/doc/intro-vegan.Rnw | 2 vegan-1.13-0/vegan/inst/doc/intro-vegan.pdf |binary vegan-1.13-0/vegan/inst/doc/intro-vegan.tex | 67 ++-- vegan-1.13-0/vegan/inst/doc/vegan.bib | 43 ++ vegan-1.13-0/vegan/man/BCI.Rd | 10 vegan-1.13-0/vegan/man/anova.cca.Rd | 10 vegan-1.13-0/vegan/man/betadisper.Rd | 96 ++++-- vegan-1.13-0/vegan/man/betadiver.Rd |only vegan-1.13-0/vegan/man/biplot.rda.Rd | 8 vegan-1.13-0/vegan/man/capscale.Rd | 31 +- vegan-1.13-0/vegan/man/designdist.Rd | 20 - vegan-1.13-0/vegan/man/diversity.Rd | 15 vegan-1.13-0/vegan/man/isomap.Rd | 15 vegan-1.13-0/vegan/man/metaMDS.Rd | 17 - vegan-1.13-0/vegan/man/mso.Rd |only vegan-1.13-0/vegan/man/oecosimu.Rd | 56 ++- vegan-1.13-0/vegan/man/ordihull.Rd | 7 vegan-1.13-0/vegan/man/orditkplot.Rd | 19 + vegan-1.13-0/vegan/man/permuted.index2.Rd | 71 ++++ vegan-1.13-0/vegan/man/permutest.betadisper.Rd |only vegan-1.13-0/vegan/man/screeplot.cca.Rd | 7 vegan-1.13-0/vegan/man/specaccum.Rd | 5 vegan-1.13-0/vegan/man/taxondive.Rd | 2 vegan-1.13-0/vegan/man/vegan-internal.Rd | 4 vegan-1.13-0/vegan/man/vegandocs.Rd | 4 vegan-1.13-0/vegan/man/vegdist.Rd | 4 87 files changed, 1486 insertions(+), 410 deletions(-)
Author: Delphine Charif and Jean R. Lobry and Anamaria Necsulea and Leonor Palmeira and Simon Penel
Title: Biological Sequences Retrieval and Analysis
Description: Exploratory data analysis and data visualization
for biological sequence (DNA and protein) data. Include also
utilities for sequence data management under the ACNUC system.
Diff between seqinr versions 1.1-5 dated 2007-12-18 and 1.1-6 dated 2008-05-21
seqinr-1.1-5/seqinr/inst/doc/seqinr_1_1-5.pdf |only seqinr-1.1-6/seqinr/DESCRIPTION | 6 seqinr-1.1-6/seqinr/R/choosebank.R | 9 seqinr-1.1-6/seqinr/R/clientid.R | 8 seqinr-1.1-6/seqinr/R/count.R | 52 seqinr-1.1-6/seqinr/R/gb2fasta.R | 2 seqinr-1.1-6/seqinr/R/modifylist.R | 7 seqinr-1.1-6/seqinr/R/oriloc.R | 15 seqinr-1.1-6/seqinr/R/parser.socket.R | 25 seqinr-1.1-6/seqinr/R/prepgetannots.R |only seqinr-1.1-6/seqinr/R/reverse.align.R | 115 seqinr-1.1-6/seqinr/data/revaligntest.RData |only seqinr-1.1-6/seqinr/inst/doc/seqinr_1_1-6.pdf |only seqinr-1.1-6/seqinr/inst/doc/src/appendix/FAQ.rnw | 64 seqinr-1.1-6/seqinr/inst/doc/src/appendix/FAQ.tex | 97 seqinr-1.1-6/seqinr/inst/doc/src/appendix/fdl.tex | 6 seqinr-1.1-6/seqinr/inst/doc/src/appendix/gencodes.tex | 19 seqinr-1.1-6/seqinr/inst/doc/src/appendix/releasenotes.rnw | 83 seqinr-1.1-6/seqinr/inst/doc/src/appendix/releasenotes.tex | 112 seqinr-1.1-6/seqinr/inst/doc/src/appendix/rundontrun.rnw | 33 seqinr-1.1-6/seqinr/inst/doc/src/appendix/rundontrun.tex | 301 -- seqinr-1.1-6/seqinr/inst/doc/src/appendix/subsequences.tex | 975 ++++-- seqinr-1.1-6/seqinr/inst/doc/src/book/book.rnw | 73 seqinr-1.1-6/seqinr/inst/doc/src/config/book.bib | 41 seqinr-1.1-6/seqinr/inst/doc/src/config/commonrnw.rnw | 7 seqinr-1.1-6/seqinr/inst/doc/src/figs/cover.pdf | 8 seqinr-1.1-6/seqinr/inst/doc/src/figs/libraryBuilding.pdf |only seqinr-1.1-6/seqinr/inst/doc/src/figs/prochlo.png |only seqinr-1.1-6/seqinr/inst/doc/src/frontmatter/cover.tex | 14 seqinr-1.1-6/seqinr/inst/doc/src/mainmatter/acnucsocket.rnw | 21 seqinr-1.1-6/seqinr/inst/doc/src/mainmatter/acnucsocket.tex | 117 seqinr-1.1-6/seqinr/inst/doc/src/mainmatter/dealseq.rnw | 134 seqinr-1.1-6/seqinr/inst/doc/src/mainmatter/dealseq.tex | 255 + seqinr-1.1-6/seqinr/inst/doc/src/mainmatter/extractseqs.rnw |only seqinr-1.1-6/seqinr/inst/doc/src/mainmatter/extractseqs.tex |only seqinr-1.1-6/seqinr/inst/doc/src/mainmatter/getseqacnuc.rnw | 708 ---- seqinr-1.1-6/seqinr/inst/doc/src/mainmatter/getseqacnuc.tex | 1625 ----------- seqinr-1.1-6/seqinr/inst/doc/src/mainmatter/getseqflat.rnw | 42 seqinr-1.1-6/seqinr/inst/doc/src/mainmatter/getseqflat.tex | 152 - seqinr-1.1-6/seqinr/inst/doc/src/mainmatter/introduction.rnw | 16 seqinr-1.1-6/seqinr/inst/doc/src/mainmatter/introduction.tex | 57 seqinr-1.1-6/seqinr/inst/doc/src/mainmatter/multivariate.tex | 19 seqinr-1.1-6/seqinr/inst/doc/src/mainmatter/nonparastats.rnw | 109 seqinr-1.1-6/seqinr/inst/doc/src/mainmatter/nonparastats.tex | 162 - seqinr-1.1-6/seqinr/inst/doc/src/mainmatter/querylang.rnw |only seqinr-1.1-6/seqinr/inst/doc/src/mainmatter/querylang.tex |only seqinr-1.1-6/seqinr/inst/doc/src/misc/seqinRtodolist.txt | 2 seqinr-1.1-6/seqinr/inst/doc/src/tables/aacost.tex | 4 seqinr-1.1-6/seqinr/inst/doc/src/tables/dpqrtable.tex | 4 seqinr-1.1-6/seqinr/inst/doc/src/tables/toyaa.tex | 4 seqinr-1.1-6/seqinr/inst/doc/src/tables/toycodon.tex | 4 seqinr-1.1-6/seqinr/inst/sequences/humanMito.fasta |only seqinr-1.1-6/seqinr/man/acnucopen.Rd | 3 seqinr-1.1-6/seqinr/man/choosebank.Rd | 23 seqinr-1.1-6/seqinr/man/count.Rd | 71 seqinr-1.1-6/seqinr/man/draw.rearranged.oriloc.Rd | 13 seqinr-1.1-6/seqinr/man/getAnnot.Rd | 2 seqinr-1.1-6/seqinr/man/modifylist.Rd | 6 seqinr-1.1-6/seqinr/man/oriloc.Rd | 13 seqinr-1.1-6/seqinr/man/parser.socket.Rd | 6 seqinr-1.1-6/seqinr/man/prepgatannots.Rd |only seqinr-1.1-6/seqinr/man/prochlo.Rd | 99 seqinr-1.1-6/seqinr/man/revaligntest.Rd |only seqinr-1.1-6/seqinr/man/reverse.align.Rd | 41 64 files changed, 2501 insertions(+), 3283 deletions(-)
Author: Jim Lemon ,
Ben Bolker ,
Sander Oom ,
Eduardo Klein ,
Barry Rowlingson ,
Hadley Wickham ,
Anupam Tyagi ,
Olivier Eterradossi ,
Gabor Grothendieck ,
Michael Toews
John Kane
Title: Various plotting functions
Description: Lots of plots, various labeling, axis and color scaling functions.
Diff between plotrix versions 2.4-1 dated 2008-04-08 and 2.4-2 dated 2008-05-21
DESCRIPTION | 6 +++--- INDEX | 2 ++ R/barhier.R |only R/brkdn.plot.R | 13 +++++++++---- R/lengthKey.R |only R/radial.plot.R | 2 +- R/thigmophobe.R | 2 ++ R/vectorField.R |only man/barhier.Rd |only man/brkdn.plot.Rd | 4 ++-- man/color.scale.Rd | 5 +++++ man/color2D.matplot.Rd | 11 +++++++++-- man/lengthKey.Rd |only man/std.error.Rd | 2 +- man/twoord.plot.Rd | 26 ++++++++++++++++++++++++++ man/vectorField.Rd |only 16 files changed, 60 insertions(+), 13 deletions(-)
Author: Sшren Hшjsgaard
Title: Groupwise computations of summary statistics and other utilities
Description: Facilities for groupwise computations of summary statistics and other facilities for working with grouped data (similar to what can be achieved by proc means or proc summary of the SAS system).
Diff between doBy versions 2.3 dated 2008-03-26 and 3.0 dated 2008-05-21
doBy-2.3/doBy/inst/doc/doBy.tex |only doBy-3.0/doBy/ChangeLog | 9 doBy-3.0/doBy/DESCRIPTION | 4 doBy-3.0/doBy/NAMESPACE | 2 doBy-3.0/doBy/R/summaryBy.R | 1019 +++++++++--- doBy-3.0/doBy/inst/doc/.build.timestamp |only doBy-3.0/doBy/inst/doc/doBy.Rnw | 47 doBy-3.0/doBy/inst/doc/doBy.pdf | 2661 +++++++++++++++----------------- doBy-3.0/doBy/man/summaryBy.Rd | 17 9 files changed, 2082 insertions(+), 1677 deletions(-)
Author: Jim Lemon ,
Title: Completing ranks
Description: Functions for completing and recalculating rankings.
Diff between crank versions 0.9 dated 2008-01-15 and 1.0 dated 2008-05-21
DESCRIPTION | 6 +++--- INDEX | 11 ++++++++++- R/fillArows.R |only R/getLWargs.R |only R/listBuilder.R |only R/listCrawler.R |only R/lwscreen.R |only R/muranks.R | 1 + R/page.test.R |only R/permute.R |only man/fillArow.Rd |only man/fillArows.Rd |only man/getLWargs.Rd |only man/listBuilder.Rd |only man/listCrawler.Rd |only man/lw.FriedmanTest.Rd |only man/lwscreen.Rd |only man/meanranks.Rd | 2 +- man/muranks.Rd | 20 ++++++++++++++++++++ man/page.trend.test.Rd |only man/permute.Rd |only man/print.lwstat.Rd |only man/print.page.trend.test.Rd |only 23 files changed, 35 insertions(+), 5 deletions(-)
Author: Karsten Tabelow ,
Joerg Polzehl
Title: Adaptive Smoothing of Digital Images
Description: This package implements tools for manipulationg digital images and the Propagation Separation approach
by Polzehl and Spokoiny (2006) for smoothing digital images.
Diff between adimpro versions 0.6.2 dated 2008-05-20 and 0.6.3 dated 2008-05-21
DESCRIPTION | 6 +++--- R/io.R | 33 +++++++++++++++++++++------------ R/misc.r | 4 ++++ README | 15 +++++++++++---- demo/awsimage.r | 4 ++++ demo/color.r | 4 ++++ demo/io.r | 5 ++++- demo/manipulate.r | 5 ++++- demo/raw.r | 4 ++++ man/adjust.image.Rd | 4 ++++ man/awsimage.Rd | 4 ++++ man/colorspace.Rd | 4 ++++ man/edges.Rd | 5 ++++- man/imganiso2D.Rd | 4 ++++ man/plot.adimpro.Rd | 4 ++++ man/rotate.image.Rd | 4 ++++ man/show.image.Rd | 4 ++++ man/shrink.image.Rd | 4 ++++ 18 files changed, 95 insertions(+), 22 deletions(-)
Author: S original by Rene Carmona and
Bruno Torresani ;
R port by Brandon Whitcher
Title: Time-Frequency analysis of 1-D signals
Description: Rwave is a library of R functions which provide an
environment for the Time-Frequency analysis of 1-D signals (and
especially for the wavelet and Gabor transforms of noisy signals).
It was originally written for Splus by Rene Carmona, Bruno Torresani,
and Wen L. Hwang, first at the University of California at Irvine and
then at Princeton University. Credit should also be given to Andrea
Wang whose functions on the dyadic wavelet transform are included.
Rwave is based on the book:
"Practical Time-Frequency Analysis: Gabor and Wavelet Transforms with
an Implementation in S", by Rene Carmona, Wen L. Hwang and Bruno
Torresani, Academic Press, 1998.
Diff between Rwave versions 1.24-1 dated 2008-05-02 and 1.24-2 dated 2008-05-21
DESCRIPTION | 6 +++--- R/00util.R | 3 +-- R/Cwt_Morlet.R | 15 +++++---------- R/Cwt_Squeezing.R | 5 ++--- R/Cwt_Thierry.R | 9 +++------ R/Cwt_phase.R | 5 ++--- R/cwt_dog.R | 9 +++------ R/gRidge_Irregular.R | 2 +- R/gRidge_Recons.R | 2 +- R/gabor.R | 15 ++++----------- R/mgabor.R | 5 ++--- R/radar.r | 7 +++---- R/recon2d.r | 7 +++---- R/skernel.r | 6 ++---- R/wv.R | 3 +-- src/Swave.h | 2 -- src/kernel.h | 1 - 17 files changed, 36 insertions(+), 66 deletions(-)
The Court of Appeals for the D.C. Circuit has upheld a lower court ruling that the Department of the Treasury is required to make U.S. paper currency accessible to the blind; although the most recent changes to the higher-denomination bills have made various denominations of currency more distinguishable by people with limited vision, all the bills remain the same size and have no tactile features that distinguish the bank note denominations.
I’ll agree with the basic proposition that making major changes to the bills yet again would probably be a bit of a pain, but surely the Bureau of Engraving and Printing could punch some little holes or make some raised dots on the existing bill designs without compromising their usability in existing vending machines.
Andy Guess at Inside Higher Ed reports on the growing trend towards abolishing Friday classes at commuter campuses due to increasing fuel costs. I’m sure there are a few college classes that lend themselves to the MWF, 50-minute pattern—I think foreign languages probably lend themselves to a more intense approach, which you wouldn’t get meeting 1–2 times per week—but I don’t think I’ve ever taught a political science class that worked very well in the MWF pattern. Killing the MWF pattern might lead to underutilization of classrooms on Fridays, but Duke solved the problem by creating a WF pattern as an alternative for the MW pattern and having some 150-minute Monday and Friday classes, primarily graduate seminars.
Another potential cost reduction would be to cut course loads, either by increasing most courses to a nominal four-hour standard from the three-hour standard (Millsaps’ solution), or replacing hours with “credits” (as Duke does) and requiring fewer total courses; the bachelor’s degree at Duke is around 34–36 credits, equivalent to 102–108 semester hours in terms of classroom contact and far short of the 120+-hour requirement at most institutions.
Given the tendency for general education requirements to accumulate over time, you could only really do this successfully with an overhauled gen-ed approach—Millsaps did this by adopting a somewhat flexible ten-item core, while Duke’s seemed more like a traditional system. But many graduates these days end up taking several pointless electives to get to the required 120+ hours, so perhaps you wouldn’t have to sacrifice much from either the major or general education to get the course count down to a more efficient number.
by Gregory Laun (greg.laun@gmail.com) at May 20, 2008 09:02 PM
Author: Martyn Plummer
Title: Bayesian graphical models using MCMC
Description: Interface to the JAGS MCMC library
Diff between rjags versions 1.0.2-2 dated 2008-05-14 and 1.0.2-3 dated 2008-05-20
DESCRIPTION | 8 ++++---- R/windows/zzz.R.in | 51 ++++++++++++++++++++++++--------------------------- configure | 12 +++++++++++- configure.ac | 10 +++++++++- configure.ac.keep |only configure.ac.test |only configure.win | 3 --- 7 files changed, 48 insertions(+), 36 deletions(-)
Author: Karsten Tabelow ,
Joerg Polzehl
Title: Adaptive Smoothing of Digital Images
Description: This package implements tools for manipulationg digital images and the Propagation Separation approach
by Polzehl and Spokoiny (2006) for smoothing digital images.
Diff between adimpro versions 0.6.1 dated 2008-05-19 and 0.6.2 dated 2008-05-20
DESCRIPTION | 4 ++-- man/adimpro.Rd | 12 +----------- man/develop.raw.Rd | 9 +-------- 3 files changed, 4 insertions(+), 21 deletions(-)
Author: Josselin Noirel and Guido Sanguinetti
Title: Mixture Model on Graphs
Description: This package implements the Mixture Model on Graphs
developed in Sanguinetti et al., Bioinformatics 2008. The
graph structure is used to infer quantities that were not
measured, based on the neighbours' measurements. This approach
was developed to address problems typical of Quantitative
Proteomics but could be applicable to many other domains.
Diff between MMG versions 1.2.1 dated 2008-05-16 and 1.2.2 dated 2008-05-20
CHANGES | 6 DESCRIPTION | 5 R/MMG.compute.R | 2 R/MMG.cut.graph.R | 2 R/MMG.make.dot.R | 2 inst/.DS_Store |only inst/doc/MMG.Rnw | 22 +- inst/doc/MMG.pdf | 455 +++++++++++++++++++++++++--------------------------- inst/doc/nostoc.dot | 16 - inst/doc/test1.dot | 4 inst/doc/test2.dot | 8 man/MMG-package.Rd | 4 src/MMG_compute.c | 2 src/MMG_cut_graph.c | 2 src/MMG_make_dot.c | 2 15 files changed, 266 insertions(+), 266 deletions(-)
Author: Hsin-ya Lee , Yung-jin Lee
Title: data analysis of drug stability
Description: A menu-driven package for data analysis of drug stability based on ICH guideline(such as estimation of shelf-life from a 3-batch profile.)
Diff between stab versions 0.0.1 dated 2008-05-02 and 0.0.2 dated 2008-05-20
DESCRIPTION | 6 ++-- R/MultipleAnalyze.r | 63 +++++++++++++++++++++++----------------------------- R/zzz.R | 2 - 3 files changed, 32 insertions(+), 39 deletions(-)
Author: Ben B. Hansen ,
with embedded Fortran code due to Dimitri P. Bertsekas
and Paul Tseng.
Title: Functions for optimal matching
Description: Functions to perform optimal matching, particularly full matching
Diff between optmatch versions 0.3-9 dated 2008-05-14 and 0.4-0 dated 2008-05-20
ChangeLog | 5 +- DESCRIPTION | 6 +- NAMESPACE | 1 R/moremethods.optmatch.R |only R/stratumStructure.R | 6 ++ inst/doc/optmatch.pdf |binary man/stratumStructure.Rd | 63 +++++++++++++++++++++++++++-- tests/moremethods.optmatch-tests.R |only tests/moremethods.optmatch-tests.Rout.save |only tests/stratumStructure-tests.R |only tests/stratumStructure-tests.Rout.save |only 11 files changed, 74 insertions(+), 7 deletions(-)
Author: Trent McDonald
Title: Analysis of Mark-Recapture data
Description: Analysis of mark-recapture (capture-recapture) data using individual, time, and individual-time varying covariates. Version 1.X contains functions to estimate live-capture Cormack-Jolly-Seber open population models.
Diff between mra versions 1.1 dated 2007-11-20 and 1.2 dated 2008-05-20
DESCRIPTION | 6 +++--- R/residuals.cjs.R | 2 +- man/F.cjs.covars.Rd | 13 +++++++------ man/F.cjs.estim.Rd | 13 +++++++------ 4 files changed, 18 insertions(+), 16 deletions(-)
Author: S original by David James ,
R port by Kurt Hornik .
Title: Chronological objects which can handle dates and times
Description: Chronological objects which can handle dates and times
Diff between chron versions 2.3-22 dated 2008-03-04 and 2.3-23 dated 2008-05-20
ChangeLog | 11 +++++++++++ DESCRIPTION | 6 +++--- R/dates.R | 6 +++++- inst/CITATION | 3 ++- 4 files changed, 21 insertions(+), 5 deletions(-)
Author: Bettina Gruen
Title: Bayesian Mixture Models with JAGS
Description: Bayesian mixture models of univariate Gaussian distributions using JAGS
Diff between bayesmix versions 0.5-4 dated 2007-04-11 and 0.6-0 dated 2008-05-20
DESCRIPTION | 16 ++++++++-------- NEWS | 8 ++++++-- R/AAA.R | 2 +- R/BMMmodel.R | 11 ++++++----- R/BMMpriors.R | 16 ++++++++-------- R/Inits.R | 8 ++++---- R/JAGScall.R | 35 ++++++++++------------------------- R/JAGScontrol.R | 18 +++++++++++------- R/JAGSrun.R | 12 ++++++------ R/Sort.R | 4 ++-- R/plots.R | 12 ++++++------ R/randomPermutation.R | 2 +- man/BMMpriors.Rd | 3 ++- man/JAGScontrol.Rd | 5 ++++- man/darwin.Rd | 2 +- man/priors.Rd | 5 +++-- 16 files changed, 79 insertions(+), 80 deletions(-)
Mom and I went to Wal-Mart today to pick up two digital converter boxes (specificlly coupon-eligible converter boxes, “CECBs”) as emergency backup for Comcast’s frequently-incompetent cable service in Memphis. It took about 15 minutes for the assorted checkout staff figured out how to ring up the converters and use the government coupons for them, but eventually we escaped with two RCA DTA800B converters.
I found the box relatively easy to use and hook up. The boxes included quick start guides in English and Spanish and full user manuals in both languages, as well as a programmable remote control (with batteries) and a short push-on coax (F-type) cable for attaching the box to a TV over the “antenna” TV input.
Both boxes worked moderately well in southeast Memphis with a rather lame RCA unpowered indoor VHF/UHF antenna I picked up a while back, which is no Silver Sensor but a bit more compact to haul around, less likely to attract quizzical stares from airport security, and better than nothing at all. Neither box was able to scan WMC‘s rather weak digital signal (authorized at 394 kW but clearly not transmitting at anything close to that power) and there’s no manual tuning option. I’d imagine if I’d brought a decent directional antenna like the Silver Sensor I’d have gotten WMC and a more stable signal on some of the other channels.
So, overall, I have no real complaints about the boxes themselves, except for the lack of a manual tuning feature available on other converters, and the SmartAntenna feature will be nice for folks with hard-to-tune channels in multiple directions when you can actually buy one again. I’ll probably examine some of the other CECB models before settling on one, however, particularly now that it appears that the reported Zenith DTT900 audio problem is fixed in newer boxes.
Author: Aaron A. King, Rick Reeves
Title: Subplex optimization algorithm
Description: The subplex algorithm for unconstrained optimization, developed by Tom Rowan.
Diff between subplex versions 1.0-10 dated 2007-12-05 and 1.0-11 dated 2008-05-19
DESCRIPTION | 6 +++--- src/call_subplex.c | 5 ++--- 2 files changed, 5 insertions(+), 6 deletions(-)
Author: Andrew Parnell
Title: Stable Isotope Analysis in R
Description: This package takes data on organism isotopes and fits a Bayesian model to their dietary habits based upon a Gaussian likelihood with a mixture dirichlet-distributed prior on the mean.
Diff between siar versions 2.2 dated 2008-04-10 and 3.1 dated 2008-05-19
siar-2.2/siar/R/loadsiardata.R |only siar-2.2/siar/data/allgroups.rda |only siar-2.2/siar/data/correctionsdemo.rda |only siar-2.2/siar/data/geese1demo.rda |only siar-2.2/siar/data/geese2demo.rda |only siar-2.2/siar/data/sourcesdemo.rda |only siar-2.2/siar/man/loadsiardata.Rd |only siar-2.2/siar/src/siarmcmcmultigroupdirichlet.c |only siar-3.1/siar/DESCRIPTION | 6 siar-3.1/siar/NAMESPACE | 2 siar-3.1/siar/R/correctionsdemo.R | 6 siar-3.1/siar/R/siardemo.R | 2 siar-3.1/siar/R/siarelicit.r |only siar-3.1/siar/R/siarhdrs.R | 14 - siar-3.1/siar/R/siarloaddata.R |only siar-3.1/siar/R/siarmcmcdirichlet.R | 6 siar-3.1/siar/R/siarmenu.R | 19 - siar-3.1/siar/R/siarplotdata.r | 270 +++++++++++++++++++----- siar-3.1/siar/R/siarproportionbysourceplot.R | 5 siar-3.1/siar/R/siarsaveoutput.R | 2 siar-3.1/siar/data/correctionsdemo.txt | 8 siar-3.1/siar/man/correctionsdemo.Rd | 14 - siar-3.1/siar/man/siar-package.Rd | 4 siar-3.1/siar/man/siarelicit.Rd |only siar-3.1/siar/man/siarloaddata.Rd |only siar-3.1/siar/man/siarmcmcdirichlet.Rd | 5 siar-3.1/siar/man/siarplotdata.Rd | 17 + siar-3.1/siar/src/siarmcmcv3.c |only siar-3.1/siar/src/use.c | 187 ++++++++++++++++ siar-3.1/siar/src/use.h | 5 30 files changed, 475 insertions(+), 97 deletions(-)
Author: Brian J. Smith ,
Jun Yan , and
Mary Kathryn Cowles
Title: Bayesian Geostatistical Modeling with RAMPS
Description: Bayesian geostatistical modeling of Gaussian processes using a reparameterized and marginalized posterior sampling (RAMPS) algorithm designed to lower autocorrelation in MCMC samples. Package performance is tuned for large spatial datasets.
Diff between ramps versions 0.6-2 dated 2008-03-25 and 0.6-3 dated 2008-05-19
ramps-0.6-2/ramps/man/corRRatio.Rd |only ramps-0.6-3/ramps/DESCRIPTION | 8 - ramps-0.6-3/ramps/NAMESPACE | 10 - ramps-0.6-3/ramps/R/corStruct.R | 251 +++++++++------------------------- ramps-0.6-3/ramps/R/engine.R | 2 ramps-0.6-3/ramps/R/predict.R | 2 ramps-0.6-3/ramps/R/utils.R | 27 +++ ramps-0.6-3/ramps/inst/CITATION | 6 ramps-0.6-3/ramps/man/DIC.Rd | 3 ramps-0.6-3/ramps/man/corClasses.Rd | 4 ramps-0.6-3/ramps/man/corRCauchy.Rd |only ramps-0.6-3/ramps/man/corRExp2.Rd | 2 ramps-0.6-3/ramps/man/corRExpwr.Rd | 2 ramps-0.6-3/ramps/man/corRExpwr2.Rd | 4 ramps-0.6-3/ramps/man/corRExpwr2Dt.Rd | 2 ramps-0.6-3/ramps/man/corRMatern.Rd | 4 ramps-0.6-3/ramps/man/georamps.Rd | 2 ramps-0.6-3/ramps/man/simJSS.Rd | 2 18 files changed, 121 insertions(+), 210 deletions(-)
Author: Robert B. Gramacy
Title: Estimation for multivariate normal data with monotone missingness
Description: Estimation of multivariate normal data of arbitrary dimension
where the pattern of missing data is monotone. Through the use of
parsimonious/shrinkage regressions (plsr, pcr, lasso, ridge, etc.),
where standard regressions fail, the package can handle an
(almost) arbitrary amount of missing data. The current version
supports maximum likelihood inference and an alpha implementation
of a Bayesian version employing a Bayesian lasso. A fully
functional standalone (alpha) interface to the Bayesian lasso
(from Park & Casella) is also provided
Diff between monomvn versions 1.1-4 dated 2007-11-11 and 1.2 dated 2008-05-19
monomvn-1.1-4/monomvn/CHANGES |only monomvn-1.1-4/monomvn/R/print.monomvn.R |only monomvn-1.1-4/monomvn/R/summary.monomvn.R |only monomvn-1.1-4/monomvn/man/summary.monomvn.Rd |only monomvn-1.2/monomvn/ChangeLog |only monomvn-1.2/monomvn/DESCRIPTION | 16 ++-- monomvn-1.2/monomvn/INDEX | 21 ++++- monomvn-1.2/monomvn/R/addy.R | 24 ++++++ monomvn-1.2/monomvn/R/blasso.R |only monomvn-1.2/monomvn/R/blasso.s3.R |only monomvn-1.2/monomvn/R/bmonomvn.R |only monomvn-1.2/monomvn/R/gamma.R |only monomvn-1.2/monomvn/R/kl.norm.R | 30 +++++++- monomvn-1.2/monomvn/R/monomvn.R | 28 +++++++ monomvn-1.2/monomvn/R/monomvn.s3.R |only monomvn-1.2/monomvn/R/posdef.approx.R | 24 ++++++ monomvn-1.2/monomvn/R/randmvn.R | 26 +++++++ monomvn-1.2/monomvn/R/regress.R | 95 ++++++++++++++++++++++----- monomvn-1.2/monomvn/R/regress.lars.R | 24 ++++++ monomvn-1.2/monomvn/R/regress.ls.R | 24 ++++++ monomvn-1.2/monomvn/R/regress.pls.R | 24 ++++++ monomvn-1.2/monomvn/R/regress.ridge.R | 24 ++++++ monomvn-1.2/monomvn/R/rmono.R | 24 ++++++ monomvn-1.2/monomvn/R/zzz.R |only monomvn-1.2/monomvn/man/blasso.Rd |only monomvn-1.2/monomvn/man/blasso.s3.Rd |only monomvn-1.2/monomvn/man/bmonomvn.Rd |only monomvn-1.2/monomvn/man/kl.norm.Rd | 6 + monomvn-1.2/monomvn/man/monomvn-internal.Rd | 3 monomvn-1.2/monomvn/man/monomvn-package.Rd | 9 +- monomvn-1.2/monomvn/man/monomvn.Rd | 36 ++++++---- monomvn-1.2/monomvn/man/monomvn.s3.Rd |only monomvn-1.2/monomvn/man/posdef.approx.Rd | 2 monomvn-1.2/monomvn/man/regress.Rd |only monomvn-1.2/monomvn/src |only 35 files changed, 387 insertions(+), 53 deletions(-)
Author: Karsten Tabelow ,
Joerg Polzehl
Title: Analysis of fMRI experiments
Description: The library contains R-functions to perform an fmri analysis
as described in
Tabelow, K., Polzehl, J., Voss, H.U., and Spokoiny, V.
Analysing fMRI experiments with structure adaptive smoothing procedures,
NeuroImage, 33:55-62 (2006).
Diff between fmri versions 1.2-5 dated 2008-03-28 and 1.2-6 dated 2008-05-19
BUGS | 5 DESCRIPTION | 6 HISTORY | 7 + NAMESPACE | 4 R/fmri.R | 338 ++++++++++++++++++++++++++++++++++++++++++++++----- R/io.R | 239 ++++++++++++++++++++++++++++++------ R/lm.R | 11 + man/cutroi.Rd |only man/extract.data.Rd | 4 man/fmriica.Rd | 3 man/plot.fmridata.Rd | 9 + 11 files changed, 543 insertions(+), 83 deletions(-)
Author: Robin K. S. Hankin
Title: Continued fractions
Description: Various utilities for evaluating continued fractions
Diff between contfrac versions 1.1-2 dated 2008-04-24 and 1.1-4 dated 2008-05-19
DESCRIPTION | 4 ++-- man/CF.Rd | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-)
Author: Karsten Tabelow ,
Joerg Polzehl
Title: Adaptive Smoothing of Digital Images
Description: This package implements tools for manipulationg digital images and the Propagation Separation approach
by Polzehl and Spokoiny (2006) for smoothing digital images.
Diff between adimpro versions 0.4.4 dated 2007-11-23 and 0.6.1 dated 2008-05-19
BUGS |only DESCRIPTION | 11 NAMESPACE | 7 R/aniso.r |only R/awsimage.r | 398 +++++-- R/camera.R |only R/color.R | 432 ++++++-- R/edges.R | 53 - R/io.R | 599 ++++++++--- R/misc.r | 39 README | 80 + demo |only inst/img/rawimage.png |only inst/img/wias-noise.ppm |binary inst/img/wias.ppm | 2511 ------------------------------------------------ man/adimpro.Rd | 57 - man/adjust.image.Rd | 38 man/awsimage.Rd | 44 man/clip.image.Rd | 6 man/colorspace.Rd | 19 man/develop.raw.Rd |only man/edges.Rd | 19 man/extract.image.Rd | 4 man/extract.info.Rd |only man/extract.ni.Rd | 4 man/imganiso2D.Rd |only man/mask.create.Rd | 2 man/plot.adimpro.Rd | 25 man/rotate.image.Rd | 8 man/show.image.Rd | 53 - man/shrink.image.Rd | 2 man/summary.adimpro.Rd | 2 man/write.image.Rd | 57 - man/write.raw.Rd |only src/aniso.f |only src/awsimage.f | 284 +++-- src/awspimage.f | 47 src/demosaic.f |only 38 files changed, 1681 insertions(+), 3120 deletions(-)
Author: Robin K. S. Hankin
Title: electrical properties of resistor networks
Description: electrical properties of resistor networks.
Diff between ResistorArray versions 1.0-18 dated 2007-10-04 and 1.0-20 dated 2008-05-19
DESCRIPTION | 6 +++--- R/ResistorArray.R | 9 +++++---- man/Wu.Rd | 2 +- man/array.resistance.Rd | 10 +++++----- man/cube.Rd | 15 +++++++-------- man/currents.Rd | 2 +- man/ladder.Rd | 28 +++++++++++++++++++--------- man/platonic.Rd | 2 +- man/resistance.Rd | 34 +++++++++++++++++++--------------- man/series.Rd | 7 +++---- 10 files changed, 64 insertions(+), 51 deletions(-)
Author: Markus Gesmann
Title: Mack- and Munich-chain-ladder methods for insurance claims reserving
Description: The package contains the Mack- and Munich-chain-ladder methods which are used in insurance claims reserving exercise.
Diff between ChainLadder versions 0.1.1-4 dated 2008-05-16 and 0.1.1-5 dated 2008-05-19
ChangeLog | 14 ++++++++++---- DESCRIPTION | 6 +++--- R/MackChainLadderFunctions.R | 25 ++++++++++++++++--------- inst/Excel/ChainLadder_in_Excel.xls |binary 4 files changed, 29 insertions(+), 16 deletions(-)
by Claudia Beleites (Claudia.Beleites@gmx.de) at May 19, 2008 08:49 PM
by Claudia Beleites (Claudia.Beleites@gmx.de) at May 19, 2008 08:47 PM
by Claudia Beleites (Claudia.Beleites@gmx.de) at May 19, 2008 08:46 PM
Author: Aaron A. King, Edward L. Ionides, Carles Martinez Breto
Title: Partially-observed Markov processes
Description: Inference methods for partially-observed Markov processes
Diff between pomp versions 0.18-3 dated 2008-05-14 and 0.19-1 dated 2008-05-19
pomp-0.18-3/pomp/inst/doc/random_walk.Rnw |only pomp-0.18-3/pomp/inst/doc/random_walk.pdf |only pomp-0.19-1/pomp/DESCRIPTION | 6 pomp-0.19-1/pomp/NAMESPACE | 7 pomp-0.19-1/pomp/R/dmeasure-pomp.R | 42 -- pomp-0.19-1/pomp/R/dprocess-pomp.R | 36 - pomp-0.19-1/pomp/R/init.state-pomp.R | 34 - pomp-0.19-1/pomp/R/mif.R | 376 ++++++++++---------- pomp-0.19-1/pomp/R/pfilter.R | 8 pomp-0.19-1/pomp/R/pomp-methods.R | 8 pomp-0.19-1/pomp/R/pomp.R | 2 pomp-0.19-1/pomp/R/rmeasure-pomp.R | 34 - pomp-0.19-1/pomp/R/rprocess-pomp.R | 24 - pomp-0.19-1/pomp/R/simulate-pomp.R | 2 pomp-0.19-1/pomp/data/ou2.rda |binary pomp-0.19-1/pomp/inst/doc/Makefile | 4 pomp-0.19-1/pomp/inst/doc/compiled_code_in_pomp.Rnw | 36 + pomp-0.19-1/pomp/inst/doc/compiled_code_in_pomp.pdf |binary pomp-0.19-1/pomp/inst/doc/intro_to_pomp.Rnw |only pomp-0.19-1/pomp/inst/doc/intro_to_pomp.pdf |only pomp-0.19-1/pomp/man/dmeasure-pomp.Rd | 2 pomp-0.19-1/pomp/man/dprocess-pomp.Rd | 2 pomp-0.19-1/pomp/man/euler.Rd | 1 pomp-0.19-1/pomp/man/eulermultinom.Rd | 5 pomp-0.19-1/pomp/man/init.state-pomp.Rd | 11 pomp-0.19-1/pomp/man/mif-class.Rd | 2 pomp-0.19-1/pomp/man/mif-methods.Rd | 12 pomp-0.19-1/pomp/man/mif.Rd | 110 ++--- pomp-0.19-1/pomp/man/pomp-class.Rd | 7 pomp-0.19-1/pomp/man/pomp-package.Rd | 39 -- pomp-0.19-1/pomp/man/pomp.Rd | 250 ++++++++++--- pomp-0.19-1/pomp/man/rmeasure-pomp.Rd | 2 pomp-0.19-1/pomp/man/rprocess-pomp.Rd | 2 pomp-0.19-1/pomp/man/simulate-pomp.Rd | 2 pomp-0.19-1/pomp/src/dmeasure.c |only pomp-0.19-1/pomp/src/dprocess.c |only pomp-0.19-1/pomp/src/initstate.c |only pomp-0.19-1/pomp/src/rmeasure.c |only pomp-0.19-1/pomp/src/rprocess.c |only 39 files changed, 537 insertions(+), 529 deletions(-)
Author: Chris Fraley and Adrian Raftery
Title: Model-Based Clustering / Normal Mixture Modeling
Description: Model-based clustering and normal mixture modeling
including Bayesian regularization
Diff between mclust versions 3.1-4 dated 2008-05-16 and 3.1-5 dated 2008-05-19
DESCRIPTION | 4 ++-- R/mclust.R | 8 ++++---- 2 files changed, 6 insertions(+), 6 deletions(-)
Author: Deepayan Sarkar
Title: Extra Graphical Utilities Based on Lattice
Description: Extra graphical utilities based on lattice
Diff between latticeExtra versions 0.3-1 dated 2007-10-21 and 0.4-1 dated 2008-05-19
DESCRIPTION | 6 +++--- NAMESPACE | 2 ++ R/mapplot.R | 2 +- R/segplot.R |only man/mapplot.Rd | 2 +- man/panel.segplot.Rd |only man/segplot.Rd |only 7 files changed, 7 insertions(+), 5 deletions(-)
Author: Deepayan Sarkar
Title: Lattice Graphics
Description: Implementation of Trellis Graphics. See ?Lattice for a
brief introduction
Diff between lattice versions 0.17-7 dated 2008-05-03 and 0.17-8 dated 2008-05-19
DESCRIPTION | 6 +++--- R/histogram.R | 2 +- man/xyplot.Rd | 21 ++++++++++++++++----- 3 files changed, 20 insertions(+), 9 deletions(-)
Author: Michael Lawrence, John Verzani
Title: Toolkit implementation of gWidgets for RGtk2
Description: Port of gWidgets API to RGtk2
Diff between gWidgetsRGtk2 versions 0.0-33 dated 2008-05-04 and 0.0-34 dated 2008-05-19
ChangeLog | 8 ++++ DESCRIPTION | 4 +- NEWS | 6 +++ R/aaaGenerics.R | 39 +++++++++++---------- R/gcheckboxgroup.R | 68 +++++++++++++++++++++++++++++++++++--- man/gWidgetsRGtk2-undocumented.Rd | 3 + 6 files changed, 103 insertions(+), 25 deletions(-)
Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter,
Tilmann Gneiting, Michael Polakowski, University of Washington
Title: Probabilistic Forecasting using Ensembles and Bayesian Model Averaging
Description: Bayesian Model Averaging to create probabilistic
forecasts from ensemble forecasts and weather observations.
Diff between ensembleBMA versions 2.1 dated 2007-08-25 and 3.0-0 dated 2008-05-19
ensembleBMA-2.1/ensembleBMA/R/bmaModelParameters.R |only ensembleBMA-2.1/ensembleBMA/R/bmaModelParameters.ensembleBMAgamma0.R |only ensembleBMA-2.1/ensembleBMA/R/bmaModelParameters.ensembleBMAnormal.R |only ensembleBMA-2.1/ensembleBMA/R/bmaModelParameters.fitBMAgamma0.R |only ensembleBMA-2.1/ensembleBMA/R/bmaModelParameters.fitBMAnormal.R |only ensembleBMA-2.1/ensembleBMA/R/cdfBMA.R |only ensembleBMA-2.1/ensembleBMA/R/cdfBMA.ensembleBMAgamma0.R |only ensembleBMA-2.1/ensembleBMA/R/cdfBMA.ensembleBMAnormal.R |only ensembleBMA-2.1/ensembleBMA/R/cdfBMA.fitBMAgamma0.R |only ensembleBMA-2.1/ensembleBMA/R/cdfBMA.fitBMAnormal.R |only ensembleBMA-2.1/ensembleBMA/R/gamma0BMAcdf.R |only ensembleBMA-2.1/ensembleBMA/R/gamma0BMAquant.R |only ensembleBMA-2.1/ensembleBMA/R/normalBMAcdf.R |only ensembleBMA-2.1/ensembleBMA/R/normalBMAquant.R |only ensembleBMA-2.1/ensembleBMA/R/plotBMAforecast.R |only ensembleBMA-2.1/ensembleBMA/R/precipitationData.R |only ensembleBMA-2.1/ensembleBMA/R/pressureData.R |only ensembleBMA-2.1/ensembleBMA/R/quantileForecastBMA.R |only ensembleBMA-2.1/ensembleBMA/R/quantileForecastBMA.ensembleBMAgamma0.R |only ensembleBMA-2.1/ensembleBMA/R/quantileForecastBMA.ensembleBMAnormal.R |only ensembleBMA-2.1/ensembleBMA/R/quantileForecastBMA.fitBMAgamma0.R |only ensembleBMA-2.1/ensembleBMA/R/quantileForecastBMA.fitBMAnormal.R |only ensembleBMA-2.1/ensembleBMA/R/temperatureData.R |only ensembleBMA-2.1/ensembleBMA/man/bmaModelParameters.Rd |only ensembleBMA-2.1/ensembleBMA/man/cdfBMA.Rd |only ensembleBMA-2.1/ensembleBMA/man/plotBMAforecast.Rd |only ensembleBMA-2.1/ensembleBMA/man/quantileForecastBMA.Rd |only ensembleBMA-3.0-0/ensembleBMA/DESCRIPTION | 12 ensembleBMA-3.0-0/ensembleBMA/R/brierScore.R | 2 ensembleBMA-3.0-0/ensembleBMA/R/brierScore.ensembleBMAgamma0.R | 169 ++--- ensembleBMA-3.0-0/ensembleBMA/R/brierScore.ensembleBMAnormal.R | 138 ++-- ensembleBMA-3.0-0/ensembleBMA/R/brierScore.fitBMAgamma0.R | 117 +--- ensembleBMA-3.0-0/ensembleBMA/R/brierScore.fitBMAnormal.R | 99 ++- ensembleBMA-3.0-0/ensembleBMA/R/cdf.R |only ensembleBMA-3.0-0/ensembleBMA/R/cdf.ensembleBMAgamma.R |only ensembleBMA-3.0-0/ensembleBMA/R/cdf.ensembleBMAgamma0.R |only ensembleBMA-3.0-0/ensembleBMA/R/cdf.ensembleBMAnormal.R |only ensembleBMA-3.0-0/ensembleBMA/R/cdf.fitBMAgamma0.R |only ensembleBMA-3.0-0/ensembleBMA/R/cdf.fitBMAnormal.R |only ensembleBMA-3.0-0/ensembleBMA/R/cdfBMAgamma0.R |only ensembleBMA-3.0-0/ensembleBMA/R/cdfBMAnormal.R |only ensembleBMA-3.0-0/ensembleBMA/R/crps.R | 5 ensembleBMA-3.0-0/ensembleBMA/R/crps.ensembleBMAgamma0.R | 240 +++----- ensembleBMA-3.0-0/ensembleBMA/R/crps.ensembleBMAnormal.R | 191 +++--- ensembleBMA-3.0-0/ensembleBMA/R/crps.fitBMAgamma0.R | 158 +---- ensembleBMA-3.0-0/ensembleBMA/R/crps.fitBMAnormal.R | 108 +-- ensembleBMA-3.0-0/ensembleBMA/R/crpsNormal.R | 33 - ensembleBMA-3.0-0/ensembleBMA/R/dateCheck.R |only ensembleBMA-3.0-0/ensembleBMA/R/ensembleBMA.R | 39 - ensembleBMA-3.0-0/ensembleBMA/R/ensembleBMAgamma0.R | 172 +++--- ensembleBMA-3.0-0/ensembleBMA/R/ensembleBMAnormal.R | 201 ++++--- ensembleBMA-3.0-0/ensembleBMA/R/ensembleData.R | 8 ensembleBMA-3.0-0/ensembleBMA/R/fitBMA.R | 28 ensembleBMA-3.0-0/ensembleBMA/R/fitBMAgamma0.R | 282 ++++------ ensembleBMA-3.0-0/ensembleBMA/R/fitBMAnormal.R | 113 ++-- ensembleBMA-3.0-0/ensembleBMA/R/inverseLogit.R |only ensembleBMA-3.0-0/ensembleBMA/R/julTOymdh.R |only ensembleBMA-3.0-0/ensembleBMA/R/mae.R | 5 ensembleBMA-3.0-0/ensembleBMA/R/mae.ensembleBMAgamma0.R | 251 +++----- ensembleBMA-3.0-0/ensembleBMA/R/mae.ensembleBMAnormal.R | 223 +++---- ensembleBMA-3.0-0/ensembleBMA/R/mae.fitBMAgamma0.R | 171 +----- ensembleBMA-3.0-0/ensembleBMA/R/mae.fitBMAnormal.R | 169 +---- ensembleBMA-3.0-0/ensembleBMA/R/matchEnsembleMembers.R | 35 - ensembleBMA-3.0-0/ensembleBMA/R/matchEnsembleMembers.ensembleBMAgamma0.R |only ensembleBMA-3.0-0/ensembleBMA/R/matchEnsembleMembers.ensembleBMAnormal.R |only ensembleBMA-3.0-0/ensembleBMA/R/matchEnsembleMembers.fitBMAgamma0.R |only ensembleBMA-3.0-0/ensembleBMA/R/matchEnsembleMembers.fitBMAnormal.R |only ensembleBMA-3.0-0/ensembleBMA/R/modelParameters.R |only ensembleBMA-3.0-0/ensembleBMA/R/modelParameters.ensembleBMAgamma0.R |only ensembleBMA-3.0-0/ensembleBMA/R/modelParameters.ensembleBMAnormal.R |only ensembleBMA-3.0-0/ensembleBMA/R/modelParameters.fitBMAgamma0.R |only ensembleBMA-3.0-0/ensembleBMA/R/modelParameters.fitBMAnormal.R |only ensembleBMA-3.0-0/ensembleBMA/R/plotProbcast.R |only ensembleBMA-3.0-0/ensembleBMA/R/quantBMAgamma0.R |only ensembleBMA-3.0-0/ensembleBMA/R/quantBMAnormal.R |only ensembleBMA-3.0-0/ensembleBMA/R/quantileForecast.R |only ensembleBMA-3.0-0/ensembleBMA/R/quantileForecast.ensembleBMAgamma.R |only ensembleBMA-3.0-0/ensembleBMA/R/quantileForecast.ensembleBMAgamma0.R |only ensembleBMA-3.0-0/ensembleBMA/R/quantileForecast.ensembleBMAnormal.R |only ensembleBMA-3.0-0/ensembleBMA/R/quantileForecast.fitBMAgamma0.R |only ensembleBMA-3.0-0/ensembleBMA/R/quantileForecast.fitBMAnormal.R |only ensembleBMA-3.0-0/ensembleBMA/R/subset.ensembleData.R | 55 + ensembleBMA-3.0-0/ensembleBMA/R/trainingControl.R |only ensembleBMA-3.0-0/ensembleBMA/R/trainingData.R | 21 ensembleBMA-3.0-0/ensembleBMA/R/ymdhTOjul.R |only ensembleBMA-3.0-0/ensembleBMA/data/prcpTest.rda |binary ensembleBMA-3.0-0/ensembleBMA/man/brierScore.Rd | 43 - ensembleBMA-3.0-0/ensembleBMA/man/cdf.Rd |only ensembleBMA-3.0-0/ensembleBMA/man/controlBMAgamma0.Rd | 5 ensembleBMA-3.0-0/ensembleBMA/man/controlBMAnormal.Rd | 3 ensembleBMA-3.0-0/ensembleBMA/man/crps.Rd | 47 - ensembleBMA-3.0-0/ensembleBMA/man/dateCheck.Rd |only ensembleBMA-3.0-0/ensembleBMA/man/ensembleBMA.Rd | 70 -- ensembleBMA-3.0-0/ensembleBMA/man/ensembleBMAgamma0.Rd | 60 -- ensembleBMA-3.0-0/ensembleBMA/man/ensembleBMAnormal.Rd | 39 - ensembleBMA-3.0-0/ensembleBMA/man/ensembleData.Rd | 29 - ensembleBMA-3.0-0/ensembleBMA/man/fitBMA.Rd | 45 - ensembleBMA-3.0-0/ensembleBMA/man/fitBMAgamma0.Rd | 51 - ensembleBMA-3.0-0/ensembleBMA/man/fitBMAnormal.Rd | 19 ensembleBMA-3.0-0/ensembleBMA/man/julTOymdh.Rd |only ensembleBMA-3.0-0/ensembleBMA/man/mae.Rd | 66 +- ensembleBMA-3.0-0/ensembleBMA/man/modelParameters.Rd |only ensembleBMA-3.0-0/ensembleBMA/man/plotProbcast.Rd |only ensembleBMA-3.0-0/ensembleBMA/man/prcpDJdata.Rd | 2 ensembleBMA-3.0-0/ensembleBMA/man/prcpFit.Rd | 6 ensembleBMA-3.0-0/ensembleBMA/man/prcpGrid.Rd | 2 ensembleBMA-3.0-0/ensembleBMA/man/prcpTest.Rd | 3 ensembleBMA-3.0-0/ensembleBMA/man/quantileForecast.Rd |only ensembleBMA-3.0-0/ensembleBMA/man/slpTest.Rd | 5 ensembleBMA-3.0-0/ensembleBMA/man/srft.Rd | 3 ensembleBMA-3.0-0/ensembleBMA/man/trainingControl.Rd |only ensembleBMA-3.0-0/ensembleBMA/man/trainingData.Rd | 25 ensembleBMA-3.0-0/ensembleBMA/man/ymdhTOjul.Rd |only 113 files changed, 1631 insertions(+), 1937 deletions(-)
Author: Carla Freitas
Title: Argos locations filter
Description: Functions to filters animal satellite tracking data obtained from Argos. It is especially indicated for telemetry studies of marine animals, where Argos locations are predominantly of low-quality.
Diff between argosfilter versions 0.5 dated 2007-12-07 and 0.6 dated 2008-05-19
DESCRIPTION | 8 +++--- R/dist.next.R | 1 R/dist.prev.R | 1 R/sdafilter.R | 54 ++++++++++++++++++++++----------------------- R/vmask.R | 30 ++++++++++++------------- man/argosfilter-package.Rd | 8 +++--- man/sdafilter.Rd | 10 ++++---- 7 files changed, 55 insertions(+), 57 deletions(-)
Author: Felix Wittmann
Title: csv import, csv export, garbage collection,string matching and passing by reference
Description: package containing functions for convenient csv import and export with a view of using R as a calculation back end to spreadsheet-like programs such as scalc in open office; string matching and passing by reference
Diff between HFWutils versions 0.8.2007.09.16 dated 2007-09-21 and 0.9.2008.05.17 dated 2008-05-19
DESCRIPTION | 25 ++++++++++++------------- NAMESPACE | 6 ++++++ R/export_R2X_Files.r |only R/import_X2R_Files.r |only R/inst.r | 10 ++++++---- R/read.write.csv.r |only chm |only man/export_R2X_Files.Rd |only man/import_X2R_Files.Rd |only 9 files changed, 24 insertions(+), 17 deletions(-)
by Ion Georgiades (iongeo@alumni.uwaterloo.ca) at May 18, 2008 04:46 PM
Viking Pundit links an Economist article on Saturday’s election in Kuwait; one of my public opinion students this semester (a Kuwaiti) wrote an interesting paper on attitudes towards female candidates in that election.
Said Kuwaiti was also one of the graduates today, although he is one of the students I don’t remember crossing the stage—I saw all three of my honors thesis kids and about a dozen or so other seniors, but not by all means all of them. I posted some photos over at Flickr; when they say ”[i]t features the pomp and circumstance expected of a traditional Commencement celebration but with a New Orleans twist,” they’re not lying—although I don’t remember “Pomp and Circumstance” itself, so maybe they are. Or maybe it was just rearranged so much that I didn’t recognize it, which is pretty much the same thing as not playing it at all in my book. Overall it was an enjoyable experience, although I personally could have done without the fireworks, which seemed designed to thin the ranks of the tenured faculty by provoking sudden cardiac arrest.
by Ion Georgiades (iongeo@alumni.uwaterloo.ca) at May 17, 2008 01:51 AM
Author: Roger Bivand , with contributions by Luc Anselin,
Olaf Berke, Andrew Bernat, Marilia Carvalho, Yongwan Chun, Carsten Dormann,
Stйphane Dray, Rein Halbersma, Nicholas Lewin-Koh, Jielai Ma, Giovanni Millo,
Werner Mueller, Hisaji Ono, Pedro Peres-Neto, Markus Reder,
Michael Tiefelsdorf, and Danlin Yu.
Title: Spatial dependence: weighting schemes, statistics and models
Description: A collection of functions to create spatial weights matrix
objects from polygon contiguities, from point patterns by distance and
tesselations, for summarising these objects, and for permitting their
use in spatial data analysis; a collection of tests for spatial
autocorrelation, including global Moran's I, Geary's C, Hubert/Mantel
general cross product statistic, Empirical Bayes estimates and Assunзгo/Reis
Index, Getis/Ord G and multicoloured join count statistics,
local Moran's I and Getis/Ord G, saddlepoint approximations and exact
tests for global and local Moran's I; and functions for estimating
spatial simultaneous autoregressive (SAR) lag and error models,
weighted and unweighted SAR and CAR spatial regression models,
semi-parametric and Moran eigenvector spatial filtering, GM SAR error
models, and generalized spatial two stage least squares models.
Diff between spdep versions 0.4-20 dated 2008-03-25 and 0.4-21 dated 2008-05-16
spdep-0.4-20/spdep/inst/doc/Fig-bitmap-1.pdf |only spdep-0.4-20/spdep/inst/doc/Rplots.ps |only spdep-0.4-20/spdep/inst/doc/sids-010.eps |only spdep-0.4-20/spdep/inst/doc/sids-010.pdf |only spdep-0.4-20/spdep/inst/doc/sids.tex |only spdep-0.4-21/spdep/ChangeLog | 102 +++++++++++++++++++++++++++ spdep-0.4-21/spdep/DESCRIPTION | 8 +- spdep-0.4-21/spdep/R/localmoran.R | 9 +- spdep-0.4-21/spdep/R/spautolm.R | 50 ++++++------- spdep-0.4-21/spdep/inst/ChangeLog | 102 +++++++++++++++++++++++++++ spdep-0.4-21/spdep/inst/doc/sids.pdf |binary spdep-0.4-21/spdep/man/errorsarlm.Rd | 2 spdep-0.4-21/spdep/man/globalG.test.Rd | 4 - spdep-0.4-21/spdep/man/lagsarlm.Rd | 3 spdep-0.4-21/spdep/man/localmoran.Rd | 8 +- spdep-0.4-21/spdep/man/spautolm.Rd | 11 +- spdep-0.4-21/spdep/oChangelog |only spdep-0.4-21/spdep/svn2cl.xsl |only 18 files changed, 255 insertions(+), 44 deletions(-)
Author: Adrian Baddeley and
Rolf Turner , with substantial contributions
of code by Marie-Colette van Lieshout, Rasmus Waagepetersen, Kasper
Klitgaard Berthelsen and Dominic Schuhmacher. Additional contributions
by C. Beale, B. Biggerstaff, R. Bivand, F. Bonneu, J.B. Chen,
Y.C. Chin, M. de la Cruz, P.J. Diggle, S. Eglen, A. Gault, M. Genton,
P. Grabarnik, C. Graf, J. Franklin, U. Hahn, M. Hering, M.B. Hansen,
M. Hazelton, J. Heikkinen, K. Hornik, R. Ihaka, R. John-Chandran,
D. Johnson, J. Laake, J. Mateu, P. McCullagh, X.C. Mi, J. Moller,
L.S. Nielsen, E. Parilov, J. Picka, M. Reiter, B.D. Ripley,
B. Rowlingson, J. Rudge, A. Sarkka, K. Schladitz, B.T. Scott,
I.-M. Sintorn, M. Spiess, M. Stevenson, P. Surovy, B. Turlach,
A. van Burgel, H. Wang and S. Wong.
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data,
mainly Spatial Point Patterns, including multitype/marked points
and spatial covariates, in any two-dimensional spatial region.
Contains functions for plotting spatial data,
exploratory data analysis, model-fitting, simulation,
spatial sampling, model diagnostics,
and formal inference. Data types include point patterns,
line segment patterns, spatial windows, and
pixel images. Point process models can be
fitted to point pattern data. Cluster type models are fitted
by the method of minimum contrast. Very general Gibbs point
process models can be fitted to point pattern data
using a function ppm similar to lm or glm. Models may
include dependence on covariates, interpoint interaction
and dependence on marks. Fitted models can be simulated automatically.
Also provides facilities for formal inference (such as chi-squared
tests) and model diagnostics (including simulation
envelopes, residuals, residual plots and Q-Q plots).
Diff between spatstat versions 1.13-1 dated 2008-04-24 and 1.13-2 dated 2008-05-16
DESCRIPTION | 6 - INDEX | 8 + R/Gmulti.S | 20 ++-- R/Jmulti.S | 24 ++++- R/Kmulti.S | 95 +++++++++++++++++++--- R/alltypes.R | 209 ++++++++++++++++++++++++++----------------------- R/envelope.R | 79 +++++++++++++----- R/eval.fasp.R |only R/eval.fv.R | 9 +- R/fasp.R | 12 +- R/fv.R | 114 ++++++++++++++++++++++++++ R/random.S | 40 ++++++++- demo/spatstat.R | 7 + man/00spatstat.Rd | 6 + man/Lcross.Rd |only man/Ldot.Rd |only man/alltypes.Rd | 147 +++++++++++++++++++--------------- man/compatible.fasp.Rd |only man/envelope.Rd | 14 ++- man/eval.fasp.Rd |only man/eval.fv.Rd | 3 man/fasp.object.Rd | 35 +++++--- man/internal.Rd | 2 man/rjitter.Rd |only man/subset.fasp.Rd | 15 +++ man/with.fv.Rd |only 26 files changed, 606 insertions(+), 239 deletions(-)
Author: Timur V. Elzhov, Katharine M. Mullen
Title: R interface to the Levenberg-Marquardt nonlinear least-squares algorithm found in MINPACK
Description: Provides R interface to lmder and lmdif from the MINPACK library, for solving nonlinear least-squares problems by a modification of the Levenberg-Marquardt algorithm.
Diff between minpack.lm versions 1.0-9 dated 2008-03-14 and 1.1-0 dated 2008-05-16
minpack.lm-1.0-9/minpack.lm/src/getsse.f |only minpack.lm-1.0-9/minpack.lm/src/ss.f |only minpack.lm-1.1-0/minpack.lm/DESCRIPTION | 4 minpack.lm-1.1-0/minpack.lm/INDEX | 6 - minpack.lm-1.1-0/minpack.lm/R/nls.lm.R | 8 - minpack.lm-1.1-0/minpack.lm/man/nls.lm.Rd | 118 ++++++++++++++++------ minpack.lm-1.1-0/minpack.lm/man/nls.lm.control.Rd | 9 - minpack.lm-1.1-0/minpack.lm/src/fcn_lmder.c | 93 +++++++++-------- minpack.lm-1.1-0/minpack.lm/src/fcn_lmdif.c | 59 ++++++----- minpack.lm-1.1-0/minpack.lm/src/fcn_message.c | 5 minpack.lm-1.1-0/minpack.lm/src/lmder.f | 54 +++------- minpack.lm-1.1-0/minpack.lm/src/lmdif.f | 57 +++------- minpack.lm-1.1-0/minpack.lm/src/minpack_lm.h | 39 +++---- minpack.lm-1.1-0/minpack.lm/src/nls_lm.c | 92 +++++++++-------- 14 files changed, 296 insertions(+), 248 deletions(-)
Author: C. Fraley and A.E. Raftery, Dept. of Statistics,
University of Washington.
R port by Ron Wehrens.
Title: Model-based cluster analysis (older version)
Description: Model-based cluster analysis: the 2002 version of MCLUST
Diff between mclust02 versions 2.1-16 dated 2007-11-17 and 2.1-17 dated 2008-05-16
CITATION | 93 +++++++++++++++++++++++++++++++++++++++++++----------- DESCRIPTION | 8 ++-- LICENSE |only man/cv1EMtrain.Rd | 2 - man/diabetes.Rd | 1 src/mclust02.f | 7 ++-- 6 files changed, 84 insertions(+), 27 deletions(-)
Author: Chris Fraley and Adrian Raftery
Title: Model-Based Clustering / Normal Mixture Modeling
Description: Model-based clustering and normal mixture modeling
including Bayesian regularization
Diff between mclust versions 3.1-3 dated 2008-02-14 and 3.1-4 dated 2008-05-16
CITATION | 133 ++++++++++++++++++++++++++++++------------------------------ DESCRIPTION | 5 -- LICENSE | 27 ++++++------ R/mclust.R | 94 ++++++++++++++---------------------------- 4 files changed, 118 insertions(+), 141 deletions(-)
Author: Edzer J. Pebesma and others
Title: geostatistical modelling, prediction and simulation
Description: variogram modelling; simple, ordinary and universal point
or block (co)kriging, sequential Gaussian or indicator (co)simulation;
variogram and variogram map plotting utility functions.
Diff between gstat versions 0.9-46 dated 2008-05-06 and 0.9-47 dated 2008-05-16
DESCRIPTION | 6 INDEX | 2 configure | 2 data/sic97.rda |only inst/doc/gstat.pdf |30213 ++++++++++++++++++++++++++--------------------------- man/sic97.Rd |only man/tull.Rd | 1 src/machine.hin | 10 src/spbkp.c | 4 src/spchfctr.c | 7 10 files changed, 15188 insertions(+), 15057 deletions(-)
Author: Martyn Plummer, Nicky Best, Kate Cowles, Karen Vines
Title: Output analysis and diagnostics for MCMC
Description: Output analysis and diagnostics for Markov Chain Monte
Carlo simulations.
Diff between coda versions 0.13-1 dated 2007-12-12 and 0.13-2 dated 2008-05-16
DESCRIPTION | 6 +++--- R/output.R | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-)
Author: Lukasz Nieweglowski.
Title: Cluster Validation Techniques
Description:
Package contains most of the popular internal and external cluster validation methods ready to use for the most of the outputs
produced by functions coming from package "cluster". Package contains also functions and examples of usage for cluster
stability approach applied to algorithms implemented in "cluster" package.
Diff between clv versions 0.1-2 dated 2008-04-07 and 0.2 dated 2008-05-16
DESCRIPTION | 6 ++-- NAMESPACE | 4 ++- R/01_wrappers.R |only R/02_constants.R |only R/cluster_stability.R |only R/internals.R | 31 ++++++++++++++++++++++--- man/cls_set_section.Rd | 2 - man/cluster_stability.Rd |only man/confusion_matrix.Rd | 2 - man/dot_product.Rd | 6 ++-- src/cluster_stability.c | 47 +++++++++++++++++++++++++++++++++++++++ src/standard_external_measures.c | 1 12 files changed, 85 insertions(+), 14 deletions(-)