by Romain Francois (francoisromain@free.fr) at July 03, 2009 10:23 PM
Author: Roeland Kindt
Title: GUI for biodiversity and community ecology analysis
Description: This package provides a GUI (Graphical User Interface, via
the R-Commander) and some utility functions (often based on the
vegan package) for statistical analysis of biodiversity and
ecological communities, including species accumulation curves,
diversity indices, Renyi profiles, GLMs for analysis of species
abundance and presence-absence, distance matrices, Mantel
tests, and cluster, constrained and unconstrained ordination
analysis. A book on biodiversity and community ecology analysis
is available for free download from the website.
Diff between BiodiversityR versions 1.2 dated 2008-05-13 and 1.3 dated 2009-07-03
DESCRIPTION | 40 ++++++++++----- R/caprescale.R | 109 ++++++++++++++++++++++--------------------- R/diversityresult.R | 1 inst/etc/BiodiversityGUI.R | 80 +++++++++++++++---------------- man/BiodiversityR-package.Rd | 8 +-- man/BiodiversityRGUI.Rd | 2 man/caprescale.Rd | 11 ++-- man/diversityresult.Rd | 2 man/rankabundance.Rd | 2 9 files changed, 138 insertions(+), 117 deletions(-)
Author: Philippe Grosjean
Title: Tcl/Tk Additions
Description: A series of additional Tcl commands and Tk widgets with
style and various functions (under Windows: DDE exchange,
access to the registry and icon manipulation) to supplement the
tcltk package.
Diff between tcltk2 versions 1.0-9 dated 2009-06-28 and 1.1-0 dated 2009-07-03
tcltk2-1.0-9/tcltk2/R/zzz.R |only tcltk2-1.0-9/tcltk2/inst/tklibs/balloon1.2 |only tcltk2-1.0-9/tcltk2/inst/tklibs/bwidget1.7 |only tcltk2-1.0-9/tcltk2/inst/tklibs/ctext3.1 |only tcltk2-1.0-9/tcltk2/inst/tklibs/cursor0.1 |only tcltk2-1.0-9/tcltk2/inst/tklibs/toolbar1.0 |only tcltk2-1.1-0/tcltk2/DESCRIPTION | 16 tcltk2-1.1-0/tcltk2/NAMESPACE | 16 tcltk2-1.1-0/tcltk2/NEWS | 23 + tcltk2-1.1-0/tcltk2/R/tclTask.R |only tcltk2-1.1-0/tcltk2/R/tcltk2-Internal.R |only tcltk2-1.1-0/tcltk2/R/tk2commands.R | 141 +------ tcltk2-1.1-0/tcltk2/R/tk2ico.R | 95 ++--- tcltk2-1.1-0/tcltk2/R/tk2tip.R | 9 tcltk2-1.1-0/tcltk2/R/tk2widgets.R | 329 ++++++------------ tcltk2-1.1-0/tcltk2/cleanup.win | 11 tcltk2-1.1-0/tcltk2/inst/tklibs/Diagrams0.2 |only tcltk2-1.1-0/tcltk2/inst/tklibs/autoscroll1.1 |only tcltk2-1.1-0/tcltk2/inst/tklibs/ctext3.2 |only tcltk2-1.1-0/tcltk2/inst/tklibs/cursor0.2 |only tcltk2-1.1-0/tcltk2/inst/tklibs/datefield0.2 |only tcltk2-1.1-0/tcltk2/inst/tklibs/getstring0.1 |only tcltk2-1.1-0/tcltk2/inst/tklibs/history0.1 |only tcltk2-1.1-0/tcltk2/inst/tklibs/ico1.0 |only tcltk2-1.1-0/tcltk2/inst/tklibs/ipentry0.3 |only tcltk2-1.1-0/tcltk2/inst/tklibs/khim1.0 |only tcltk2-1.1-0/tcltk2/inst/tklibs/ntext0.81 |only tcltk2-1.1-0/tcltk2/inst/tklibs/snit1.0 |only tcltk2-1.1-0/tcltk2/inst/tklibs/swaplist0.2 |only tcltk2-1.1-0/tcltk2/inst/tklibs/tablelist4.10 |only tcltk2-1.1-0/tcltk2/inst/tklibs/tooltip1.4 |only tcltk2-1.1-0/tcltk2/inst/tklibs/widget3.0 |only tcltk2-1.1-0/tcltk2/man/setLanguage.Rd | 6 tcltk2-1.1-0/tcltk2/man/tclTask.Rd |only tcltk2-1.1-0/tcltk2/man/tk2commands.Rd | 46 -- tcltk2-1.1-0/tcltk2/man/tk2widgets.Rd | 68 +-- tcltk2-1.1-0/tcltk2/test.R |only tcltk2-1.1-0/tcltk2/win/tklibs/winico0.6/pkgIndex.tcl | 3 38 files changed, 292 insertions(+), 471 deletions(-)
Author: S original by James J. Majure Iowa State
University, R port + extensions by Albrecht Gebhardt
Title: An Object-oriented Framework for Geostatistical Modeling in S+
Description: An Object-oriented Framework for Geostatistical Modeling
in S+
Diff between sgeostat versions 1.0-21 dated 2007-04-11 and 1.0-22 dated 2009-07-03
ChangeLog | 25 +++++++++++++++++-------- DESCRIPTION | 16 ++++++++++------ LICENSE |only man/identify.point.Rd | 2 +- man/plot.point.Rd | 3 ++- man/plot.variogram.Rd | 2 +- man/print.pair.Rd | 2 +- man/print.point.Rd | 2 +- 8 files changed, 33 insertions(+), 19 deletions(-)
Author: Steven Kembel , David Ackerly
, Simon Blomberg
, Peter Cowan ,
Matthew Helmus , Helene Morlon
, Campbell Webb
Title: R tools for integrating phylogenies and ecology
Description: Phylocom integration, community analyses, null-models,
traits and evolution in R
Diff between picante versions 0.7-0 dated 2009-05-24 and 0.7-1 dated 2009-07-03
DESCRIPTION | 8 ++++---- R/phylodiversity.R | 34 ++++++++++++++++++++++++++++++++-- man/pd.Rd | 8 +++++--- man/picante-package.Rd | 4 ++-- man/ses.pd.Rd |only man/utility.Rd | 5 ++++- 6 files changed, 47 insertions(+), 12 deletions(-)
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Documentation for packages distr, distrEx, distrSim, distrTEst
Description: provides documentation in form of a common vignette to
packages distr, distrEx, distrMod, distrSim, distrTEst
Diff between distrDoc versions 2.1 dated 2009-04-15 and 2.1.1 dated 2009-07-03
DESCRIPTION | 8 inst/doc/Rplots.pdf | 3924 ++++----- inst/doc/distr.Rnw | 6 inst/doc/distr.pdf |21622 ++++++++++++++++++++++++++++++++++------------------ 4 files changed, 16438 insertions(+), 9122 deletions(-)
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Object orientated implementation of distributions
Description: Object orientated implementation of distributions
Diff between distr versions 2.1.1 dated 2009-06-17 and 2.1.3 dated 2009-07-03
distr-2.1.1/distr/inst/doc/.build.timestamp |only distr-2.1.1/distr/inst/doc/newDistributions-AbscDist.eps |only distr-2.1.1/distr/inst/doc/newDistributions-AbscDist.pdf |only distr-2.1.1/distr/inst/doc/newDistributions-DiscrDist.eps |only distr-2.1.1/distr/inst/doc/newDistributions-DiscrDist.pdf |only distr-2.1.1/distr/inst/doc/newDistributions-exam1.eps |only distr-2.1.1/distr/inst/doc/newDistributions-exam1.pdf |only distr-2.1.1/distr/inst/doc/newDistributions.tex |only distr-2.1.3/distr/DESCRIPTION | 14 +- distr-2.1.3/distr/inst/doc/Rplots.pdf | 72 +++++++------- distr-2.1.3/distr/inst/doc/newDistributions.Rnw | 10 + distr-2.1.3/distr/inst/doc/newDistributions.pdf |binary 12 files changed, 51 insertions(+), 45 deletions(-)
Author: Valerie Obenchain
Title: Data retrieval from a Labkey database
Description: This package imports data from a labkey database into an R
data frame
Diff between Rlabkey versions 0.0.7 dated 2009-04-01 and 0.0.8 dated 2009-07-03
Rlabkey-0.0.7/Rlabkey/license |only Rlabkey-0.0.8/Rlabkey/DESCRIPTION | 10 - Rlabkey-0.0.8/Rlabkey/LICENSE |only Rlabkey-0.0.8/Rlabkey/NEWS | 5 Rlabkey-0.0.8/Rlabkey/R/labkey.executeSql.R | 120 +++++++++---------- Rlabkey-0.0.8/Rlabkey/R/labkey.selectRows.R | 156 ++++++++++++------------- Rlabkey-0.0.8/Rlabkey/R/makeFilter.R | 97 +++++++-------- Rlabkey-0.0.8/Rlabkey/man/Rlabkey-package.Rd | 4 Rlabkey-0.0.8/Rlabkey/man/labkey.executeSql.Rd | 16 +- Rlabkey-0.0.8/Rlabkey/man/makeFilter.Rd | 4 10 files changed, 209 insertions(+), 203 deletions(-)
by Romain Francois (francoisromain@free.fr) at July 03, 2009 09:40 AM
Graham Williams sent me this graph, now item 153 in the graph gallery.
This plot draws a network but at the nodes we have simple segment plots (and in general we might have any other kind of plot at the nodes). This code constructs a network (from the network package), plots it with the nodes being invisibly plotted (using plot.network from the sna package) and then overlays the segment plots using the star function (with the key being located at a position determined by largest.empty from the Hmisc package.
Author: Douglas Bates and Ana Ines Vazquez
Title: Pedigree-based mixed-effects models
Description: Fit pedigree-based mixed-effects models.
Diff between pedigreemm versions 0.2-2 dated 2009-06-02 and 0.2-3 dated 2009-07-02
DESCRIPTION | 8 ++++---- R/pedigree.R | 15 +++++++++++++++ 2 files changed, 19 insertions(+), 4 deletions(-)
Author: Markus Loecher, Sense Networks
Title: Facilitates automated HTML report creation
Description: Facilitates automated HTML report creation, in particular
framed HTML pages and dynamically sortable tables.
Diff between HTMLUtils versions 0.1.2 dated 2009-06-08 and 0.1.3 dated 2009-07-02
DESCRIPTION | 8 ++++---- R/BasicHTML.R | 21 +++++++++++++++------ R/FramedHTML.R | 38 ++++++++++++++++++++++++++++++-------- R/myHTMLInitFile.R | 15 ++++++++++++++- man/BasicHTML.Rd | 10 ++++++---- man/FramedHTML.Rd | 13 ++++++++----- man/HTMLUtils-package.Rd | 4 ++-- man/InstallJSC.Rd | 2 +- man/myHTMLInitFile.Rd | 3 ++- 9 files changed, 82 insertions(+), 32 deletions(-)
Author: Eva Herrmann (F77 & S
original); Packaged for R and enhanced by Martin Maechler
Title: Kernel Regression Smoothing with Local or Global Plug-in
Bandwidth
Description: Kernel regression smoothing with adaptive local or global
plug-in bandwidth selection.
Diff between lokern versions 1.0-7 dated 2009-04-03 and 1.0-8 dated 2009-07-02
ChangeLog | 14 ++ DESCRIPTION | 8 - R/glkerns.R | 19 ++-- demo |only man/glkerns.Rd | 2 src/glkerns.f | 15 ++- tests/glk1.R | 11 ++ tests/glk1.Rout.save | 242 ++++++++++++++++++++++++++++++++++++++++++++++++++- 8 files changed, 293 insertions(+), 18 deletions(-)
Reader HW noticed this graphic (created by Gmail developers at Google) today on the Google Code blog, with the comment: "Post doesn't mention anything about R, but that's clearly an R boxplot!"
This is a list of new or updated packages that were released for R in June, as announced on the r-packages mailing list. To include other updates on this list, please email David Smith. For a complete list of all updates on CRAN, see the CRANberries archive for June 2009.
Author: Delia Bailey and Jonathan N. Katz
Title: Panel-Corrected Standard Error Estimation in R
Description: This package contains a function to estimate
panel-corrected standard errors. Data may contain balanced or
unbalanced panels.
Diff between pcse versions 1.6 dated 2008-11-16 and 1.7 dated 2009-07-02
DESCRIPTION | 15 ++++++++++----- R/pcse.R | 27 +++++++++++++-------------- R/summary.pcse.R | 1 - R/vcovPC.R |only demo/pcse.R | 8 ++++++++ inst |only man/pcse-package.Rd | 4 ++-- man/summary.pcse.Rd | 4 ++-- man/vcovPC.Rd |only 9 files changed, 35 insertions(+), 24 deletions(-)
Author: James Honaker , Gary King ,
Matthew Blackwell
Title: Amelia II: A Program for Missing Data
Description: Amelia II "multiply imputes" missing data in a single
cross-section (such as a survey), from a time series (like
variables collected for each year in a country), or from a
time-series-cross-sectional data set (such as collected by
years for each of several countries). Amelia II implements our
bootstrapping-based algorithm that gives essentially the same
answers as the standard IP or EMis approaches, is usually
considerably faster than existing approaches and can handle
many more variables. Unlike Amelia I and other statistically
rigorous imputation software, it virtually never crashes (but
please let us know if you find to the contrary!). The program
also generalizes existing approaches by allowing for trends in
time series across observations within a cross-sectional unit,
as well as priors that allow experts to incorporate beliefs
they have about the values of missing cells in their data.
Amelia II also includes useful diagnostics of the fit of
multiple imputation models. The program works from the R
command line or via a graphical user interface that does not
require users to know R.
Diff between Amelia versions 1.2-2 dated 2009-04-27 and 1.2-9 dated 2009-07-02
Amelia-1.2-2/Amelia/inst/doc/amelia.aux |only Amelia-1.2-2/Amelia/inst/doc/amelia.bbl |only Amelia-1.2-2/Amelia/inst/doc/amelia.blg |only Amelia-1.2-2/Amelia/inst/doc/amelia.log |only Amelia-1.2-2/Amelia/inst/doc/amelia.out |only Amelia-1.2-2/Amelia/inst/doc/amelia.tex |only Amelia-1.2-2/Amelia/inst/doc/amelia.toc |only Amelia-1.2-2/Amelia/inst/doc/case.eps |only Amelia-1.2-2/Amelia/inst/doc/case.png |only Amelia-1.2-2/Amelia/inst/doc/comp.eps |only Amelia-1.2-2/Amelia/inst/doc/comp.pdf |only Amelia-1.2-2/Amelia/inst/doc/comp1.eps |only Amelia-1.2-2/Amelia/inst/doc/comp1.pdf |only Amelia-1.2-2/Amelia/inst/doc/comp2.eps |only Amelia-1.2-2/Amelia/inst/doc/comp2.pdf |only Amelia-1.2-2/Amelia/inst/doc/diag.eps |only Amelia-1.2-2/Amelia/inst/doc/diag.png |only Amelia-1.2-2/Amelia/inst/doc/disp-2d-good.eps |only Amelia-1.2-2/Amelia/inst/doc/disp-2d-good.pdf |only Amelia-1.2-2/Amelia/inst/doc/disperse-bad.eps |only Amelia-1.2-2/Amelia/inst/doc/disperse-bad.pdf |only Amelia-1.2-2/Amelia/inst/doc/disperse-good.eps |only Amelia-1.2-2/Amelia/inst/doc/disperse-good.pdf |only Amelia-1.2-2/Amelia/inst/doc/distpri.eps |only Amelia-1.2-2/Amelia/inst/doc/distpri.png |only Amelia-1.2-2/Amelia/inst/doc/obspri.eps |only Amelia-1.2-2/Amelia/inst/doc/obspri.png |only Amelia-1.2-2/Amelia/inst/doc/obsprior.eps |only Amelia-1.2-2/Amelia/inst/doc/obsprior.png |only Amelia-1.2-2/Amelia/inst/doc/overdis1d.eps |only Amelia-1.2-2/Amelia/inst/doc/overdis1d.pdf |only Amelia-1.2-2/Amelia/inst/doc/overdis2d.eps |only Amelia-1.2-2/Amelia/inst/doc/overdis2d.pdf |only Amelia-1.2-2/Amelia/inst/doc/overimp.eps |only Amelia-1.2-2/Amelia/inst/doc/overimp.pdf |only Amelia-1.2-2/Amelia/inst/doc/priors.eps |only Amelia-1.2-2/Amelia/inst/doc/priors.png |only Amelia-1.2-2/Amelia/inst/doc/rangepri.eps |only Amelia-1.2-2/Amelia/inst/doc/rangepri.png |only Amelia-1.2-2/Amelia/inst/doc/step1.eps |only Amelia-1.2-2/Amelia/inst/doc/step1.png |only Amelia-1.2-2/Amelia/inst/doc/step2.eps |only Amelia-1.2-2/Amelia/inst/doc/step2.png |only Amelia-1.2-2/Amelia/inst/doc/step3.eps |only Amelia-1.2-2/Amelia/inst/doc/step3.png |only Amelia-1.2-2/Amelia/inst/doc/tscs.eps |only Amelia-1.2-2/Amelia/inst/doc/tscs.png |only Amelia-1.2-2/Amelia/inst/doc/varopts.eps |only Amelia-1.2-2/Amelia/inst/doc/varopts.png |only Amelia-1.2-9/Amelia/DESCRIPTION | 10 Amelia-1.2-9/Amelia/R/amcheck.r | 203 Amelia-1.2-9/Amelia/R/ameliagui.r | 14 Amelia-1.2-9/Amelia/R/diag.r | 4 Amelia-1.2-9/Amelia/R/emb.r | 99 Amelia-1.2-9/Amelia/R/missmap.R | 117 Amelia-1.2-9/Amelia/R/prep.r | 38 Amelia-1.2-9/Amelia/R/summary.amelia.R | 4 Amelia-1.2-9/Amelia/R/write.amelia.R | 1 Amelia-1.2-9/Amelia/data/freetrade.RData |only Amelia-1.2-9/Amelia/inst/doc/Makefile | 27 Amelia-1.2-9/Amelia/inst/doc/amelia.Rnw |only Amelia-1.2-9/Amelia/inst/doc/amelia.pdf |24997 ++++++++++++++++++++----- Amelia-1.2-9/Amelia/inst/doc/copyRd |only Amelia-1.2-9/Amelia/inst/doc/copyRd.Rout |only Amelia-1.2-9/Amelia/inst/doc/index.shtml | 4 Amelia-1.2-9/Amelia/inst/doc/makeDocs |only Amelia-1.2-9/Amelia/inst/doc/utf8.def |only Amelia-1.2-9/Amelia/man/africa.Rd | 2 Amelia-1.2-9/Amelia/man/amelia.Rd | 14 Amelia-1.2-9/Amelia/man/compare.density.Rd | 2 Amelia-1.2-9/Amelia/man/freetrade.Rd |only Amelia-1.2-9/Amelia/man/missmap.Rd | 11 72 files changed, 20915 insertions(+), 4632 deletions(-)
Author: Adrian Baddeley and Rolf Turner
, with substantial contributions of
code by Marie-Colette van Lieshout, Rasmus Waagepetersen,
Kasper Klitgaard Berthelsen and Dominic Schuhmacher. Additional
contributions by Ang Qi Wei, C. Beale, B. Biggerstaff, R.
Bivand, F. Bonneu, J. Burgos, J.B. Chen, Y.C. Chin, M. de la
Cruz, P.J. Diggle, S. Eglen, A. Gault, M. Genton, P. Grabarnik,
C. Graf, J. Franklin, U. Hahn, M. Hering, M.B. Hansen, M.
Hazelton, J. Heikkinen, K. Hornik, R. Ihaka, R. John-Chandran,
D. Johnson, J. Laake, J. Mateu, P. McCullagh, X.C. Mi, J.
Moller, L.S. Nielsen, E. Parilov, J. Picka, M. Reiter, B.D.
Ripley, B. Rowlingson, J. Rudge, A. Sarkka, K. Schladitz, B.T.
Scott, I.-M. Sintorn, M. Spiess, M. Stevenson, P. Surovy, B.
Turlach, A. van Burgel, H. Wang and S. Wong.
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data, mainly Spatial Point
Patterns, including multitype/marked points and spatial
covariates, in any two-dimensional spatial region. Contains
functions for plotting spatial data, exploratory data analysis,
model-fitting, simulation, spatial sampling, model diagnostics,
and formal inference. Data types include point patterns, line
segment patterns, spatial windows, and pixel images. Point
process models can be fitted to point pattern data. Cluster
type models are fitted by the method of minimum contrast. Very
general Gibbs point process models can be fitted to point
pattern data using a function ppm similar to lm or glm. Models
may include dependence on covariates, interpoint interaction
and dependence on marks. Fitted models can be simulated
automatically. Also provides facilities for formal inference
(such as chi-squared tests) and model diagnostics (including
simulation envelopes, residuals, residual plots and Q-Q plots).
Diff between spatstat versions 1.15-4 dated 2009-06-16 and 1.16-0 dated 2009-07-02
.Rbuildindex.5904 |only DESCRIPTION | 10 INDEX | 10 R/Fest.S | 186 ++++++++----- R/Gest.S | 162 ++++++----- R/Gmulti.S | 189 ++++++++----- R/Iest.R | 66 ++-- R/Jest.S | 77 ++++- R/Jmulti.S | 84 ++++-- R/Kinhom.S | 18 - R/Kmeasure.R | 223 +++++++++++----- R/Kmulti.inhom.R | 28 +- R/alltypes.R | 6 R/blur.R | 4 R/deldir.R | 12 R/density.ppp.R | 43 ++- R/distbdry.S | 16 - R/envelope.R | 28 +- R/fv.R | 47 ++- R/images.R | 47 +++ R/iplot.R |only R/istat.R |only R/plot.fasp.R | 7 R/plot.fv.R | 24 + R/plot.ppp.S | 75 ++--- R/ripras.S | 2 R/superimpose.R | 5 R/tess.R | 32 ++ R/wingeom.S | 47 +++ demo/spatstat.R | 14 - inst/doc/shapefiles.pdf | 659 ++++++++++++++++++++++++------------------------ man/00spatstat.Rd | 22 + man/AreaInter.Rd | 2 man/BadGey.Rd | 8 man/Fest.Rd | 33 +- man/Gcross.Rd | 17 + man/Gdot.Rd | 11 man/Gest.Rd | 38 +- man/Gmulti.Rd | 13 man/Hest.Rd | 2 man/Iest.Rd | 8 man/Jcross.Rd | 12 man/Jdot.Rd | 14 - man/Jest.Rd | 10 man/Jmulti.Rd | 13 man/Kcross.Rd | 2 man/Kcross.inhom.Rd | 11 man/Kdot.Rd | 2 man/Kdot.inhom.Rd | 8 man/Kest.fft.Rd | 2 man/Lcross.inhom.Rd |only man/Ldot.inhom.Rd |only man/LennardJones.Rd | 12 man/Lest.Rd | 1 man/Linhom.Rd | 5 man/MultiStrauss.Rd | 3 man/PairPiece.Rd | 4 man/SatPiece.Rd | 3 man/Strauss.Rd | 7 man/StraussHard.Rd | 5 man/adaptive.density.Rd | 2 man/alltypes.Rd | 64 ++-- man/convexhull.Rd |only man/convexhull.xy.Rd | 1 man/internal.Rd | 18 + man/iplot.Rd |only man/is.convex.Rd |only man/istat.Rd |only man/localK.Rd | 2 man/markcorr.Rd | 4 man/plot.fasp.Rd | 6 man/plot.fv.Rd | 23 + man/plot.ppp.Rd | 1 man/ppm.Rd | 8 man/qqplot.ppm.Rd | 6 tests/rmhBasic.R | 4 tests/rmhErrors.R | 2 tests/rmhMulti.R | 2 78 files changed, 1627 insertions(+), 905 deletions(-)
Author: Jose L. Izquierdo Instituto de Estudios
Biofuncionales(U.C.M.).
Title: GUI for Metabonomic Analysis
Description: Graphical User Interface for the Metabonomic Analysis
(Baseline, Normalization, Peak Detection, PCA, PLS, Nearest
Neigbourgt, Neural Network) developed to make easy this data
analysis.
Diff between Metabonomic versions 3.2 dated 2009-07-01 and 3.2.1 dated 2009-07-02
Metabonomic-3.2.1/Metabonomic/DESCRIPTION | 14 Metabonomic-3.2.1/Metabonomic/R/Met.Aligm.R | 36 - Metabonomic-3.2.1/Metabonomic/R/Met.Order.R | 32 - Metabonomic-3.2.1/Metabonomic/R/Met.PCA.R | 421 +++++++++++++------ Metabonomic-3.2.1/Metabonomic/R/Met.PLS2.R | 10 Metabonomic-3.2.1/Metabonomic/R/Met.Selection.R | 34 - Metabonomic-3.2.1/Metabonomic/R/Met.peak.detection.R | 9 Metabonomic-3.2.1/Metabonomic/R/Met.spectrum.2.R | 67 --- Metabonomic-3.2.1/Metabonomic/R/Metabonomic.R | 2 Metabonomic-3.2.1/Metabonomic/R/TABLE.R | 28 - Metabonomic-3.2.1/Metabonomic/R/showData2.R | 28 - Metabonomic-3.2/Metabonomic/R/Met.Outliers.R |only Metabonomic-3.2/Metabonomic/man/Met.Outliers.Rd |only 13 files changed, 354 insertions(+), 327 deletions(-)
Author: P. Neytchev, P. Filzmoser, R. Patnaik, A. Eisl and R. Boubela
Title: Trimmed Maximum Likelihood Estimation
Description: TLE implements a general framework for robust fitting of
finite mixture models. Parameter estimation is performed using
the EM algorithm.
Diff between tlemix versions 0.0.5 dated 2009-05-06 and 0.0.6 dated 2009-07-02
DESCRIPTION | 10 - inst/doc/tlemix-intro.pdf | 439 ++++++++++++++++++++++------------------------ 2 files changed, 219 insertions(+), 230 deletions(-)
Author: Peter Ruckdeschel
Title: Utilities for Sweave together with TeX listings package
Description: provides utilities for defining R / Rd as
Tex-package-listings "language" and including R / Rd source
file (sniplets) copied from R-forge in its most recent version
(or another url) thereby avoiding inconsistencies between
vignette and documented source code
Diff between SweaveListingUtils versions 0.2 dated 2009-04-15 and 0.3 dated 2009-07-02
DESCRIPTION | 15 ++-- R/SweaveListingOptions.R | 9 ++ R/SweaveListingUtils.R | 75 ++++++++++++++++++++++- R/keywordsStyle.R | 3 inst/MASKING | 15 +++- inst/NEWS | 24 +++++++ inst/TeX/Rdlisting.sty | 15 ++-- inst/doc/ExampleSweaveListingUtils.Rnw | 61 +++++++++++++++---- inst/doc/ExampleSweaveListingUtils.pdf |binary inst/doc/cleanup.tex |only inst/doc/preamble.tex | 2 inst/doc/preambleExp.tex | 104 +++++++++++++++++++++------------ man/0SweaveListingUtils-package.Rd | 7 +- man/SweaveListingOptions.Rd | 8 +- man/SweaveListingPreparations.Rd | 30 +++++++++ man/copySourceFromRForge.Rd | 6 - man/library.Rd | 8 ++ man/lstinputSourceFromRForge.Rd | 10 +-- man/readSourceFromRForge.Rd | 4 - 19 files changed, 306 insertions(+), 90 deletions(-)
Author: Derek Young Tatiana Benaglia Didier Chauveau Ryan Elmore Tom
Hettmansperger David Hunter Hoben Thomas Fengjuan Xuan
Title: Tools for analyzing finite mixture models
Description: A collection of R functions for analyzing finite mixture
models. This package is based upon work supported by the
National Science Foundation under Grant No. SES-0518772.
Diff between mixtools versions 0.4.0 dated 2009-04-28 and 0.4.1 dated 2009-07-02
DESCRIPTION | 9 +++--- R/normalmixEM.R | 65 ++++++++++++++++++++++++--------------------- R/parse.constraints.R |only R/tauequivnormalmixEM.R |only R/zzz.R | 1 man/normalmixEM.Rd | 20 +++++++++++++ man/tauequivnormalmixEM.Rd |only 7 files changed, 61 insertions(+), 34 deletions(-)
Author: G. Grothendieck
Title: Utilities for strings and function arguments.
Description: gsubfn is like gsub but can take a replacement function or
certain other objects instead of the replacement string.
Matches and back references are input to the replacement
function and replaced by the function output. gsubfn can be
used to split strings based on content rather than delimiters
and for quasi-perl-style string interpolation. The package also
has facilities for translating formulas to functions and
allowing such formulas in function calls instead of functions.
This can be used with R functions such as apply, sapply,
lapply, optim, integrate, xyplot, Filter and any other function
that expects another function as an input argument or functions
like cat or sql calls that may involve strings where
substitution is desirable.
Diff between gsubfn versions 0.3-8 dated 2008-12-15 and 0.5-0 dated 2009-07-02
DESCRIPTION | 48 +- R/fn.R | 13 R/gsubfn.R | 70 ++++ inst/NEWS | 9 inst/THANKS | 1 inst/doc/Rplots.pdf | 48 +- inst/doc/gsubfn.R | 2 inst/doc/gsubfn.Rnw | 10 inst/doc/gsubfn.pdf | 856 +++++++++++++++++++++++++++------------------------- man/fn.Rd | 1 man/gsubfn.Rd | 2 man/strapply.Rd | 41 ++ 12 files changed, 628 insertions(+), 473 deletions(-)
Author: Edzer J. Pebesma and others
Title: geostatistical modelling, prediction and simulation
Description: variogram modelling; simple, ordinary and universal point
or block (co)kriging, sequential Gaussian or indicator
(co)simulation; variogram and variogram map plotting utility
functions.
Diff between gstat versions 0.9-60 dated 2009-05-15 and 0.9-61 dated 2009-07-02
DESCRIPTION | 8 INDEX | 1 NAMESPACE | 1 R/krigeTg.R |only R/predict.gstat.R | 5 inst/ChangeLog | 131 inst/doc/gstat.pdf |29029 ++++++++++++++++++++++++++--------------------------- man/krigeTg.Rd |only man/pcb.Rd | 2 src/data.c | 10 src/lex.c | 109 src/lex.l | 3 src/random.c | 2 src/version.h | 6 14 files changed, 14536 insertions(+), 14771 deletions(-)
Author: Pierre Chausse
Title: Generalized Method of Moments and Generalized Empirical
Likelihood
Description: It is a complete suite to estimate models based on moment
conditions. It includes the two step Generalized method of
moments (GMM) of Hansen(1982), the iterated GMM and continuous
updated estimator (CUE) of Hansen-Eaton-Yaron(1996) and several
methods that belong to the Generalized Empirical Likelihood
(GEL) family of estimators, as presented by Smith(1997),
Kitamura(1997), Newey-Smith(2004) and Anatolyev(2005).
Diff between gmm versions 1.0-6 dated 2009-05-12 and 1.0-7 dated 2009-07-02
DESCRIPTION | 10 NEWS | 6 R/gmm_tools.R | 30 + data/Finance.rda |binary inst/doc/gmm_with_R.pdf | 800 ++++++++++++++++++++++++------------------------ inst/doc/gmm_with_R.rnw | 10 man/Finance.Rd | 72 +--- man/gmm.Rd | 81 ++-- man/kweights2.Rd |only man/lintest.Rd | 2 man/rho.Rd | 19 - 11 files changed, 512 insertions(+), 518 deletions(-)
Author: Friedrich Leisch
Title: Flexible Cluster Algorithms
Description: The main function kcca implements a general framework for
k-centroids cluster analysis supporting arbitrary distance
measures and centroid computation. Further cluster methods
include hard competitive learning, neural gas, and QT
clustering. There are numerous visualization methods for
cluster results (neighborhood graphs, convex cluster hulls,
barcharts of centroids, ...), and bootstrap methods for the
analysis of cluster stability.
Diff between flexclust versions 1.2-0 dated 2009-06-19 and 1.2-1 dated 2009-07-02
DESCRIPTION | 8 +-- NEWS | 16 ++++++- R/AAA-classes.R | 9 ++++ R/bootstrap.R | 110 ++++++++++++++++++++++++++++++++++++++++++++++++--- R/utils.R | 6 -- man/bootFlexclust.Rd | 22 +++++++--- man/stepFlexclust.Rd | 4 + 7 files changed, 153 insertions(+), 22 deletions(-)
I really don’t have any particular insight to add to others’ discussion of the sorta-kinda-maybe coup d’état in Honduras, but Steven Taylor (both here and here) and Greg Weeks have had some fairly insightful posts on the matter.
While I’d probably say that many Hondurans’ fears that maybe-ex-President Zelaya was plotting in some way to perpetuate his own rule at the expense of democratic accountability—as both Hugo Chávez and Álvaro Uribe have recently done in the broader region—were possibly justified, employing the military to raid his house and toss him on an airplane in the middle of the night doesn’t exactly strike me as the most measured response by the other branches of government. On the other hand I’ll gladly concede that the Honduran constitution appears to be a giant mess of epic proportions (amendment by decree and the lack of an impeachment mechanism being among its defects) that didn’t exactly help in avoiding an escalation of the situation to the use of extralegal means.
Elsewhere: John Carey (via John Sides) presents some data on extraordinary Latin American presidential replacements since 1990. It almost, but not quite, tempts me to dust off my old paper on stability and presidential government and add some new data, but I think it’s best for all involved if it just stays in Ukrainian, at least until I can find a sucker graduate student interested in collecting the data to update the damn thing to the present.
by Sigbert Klinke (sigbert@wiwi.hu-berlin.de) at July 01, 2009 07:39 PM
Author: Ingo Feinerer
Title: Text Mining Package
Description: A framework for text mining applications within R.
Diff between tm versions 0.3-4.1 dated 2009-05-04 and 0.4 dated 2009-07-01
tm-0.3-4.1/tm/R/plaintextdoc.R |only tm-0.3-4.1/tm/R/resolve.R |only tm-0.3-4.1/tm/R/sparse.R |only tm-0.3-4.1/tm/R/textdoccol.R |only tm-0.3-4.1/tm/man/TermDocMatrix.Rd |only tm-0.3-4.1/tm/man/TextDocCol-class.Rd |only tm-0.3-4.1/tm/man/TextDocCol.Rd |only tm-0.3-4.1/tm/man/appendMeta.Rd |only tm-0.3-4.1/tm/man/loadDoc.Rd |only tm-0.3-4.1/tm/man/removeMeta.Rd |only tm-0.3-4.1/tm/man/tmUpdate.Rd |only tm-0.4/tm/DESCRIPTION | 12 - tm-0.4/tm/NAMESPACE | 49 ++---- tm-0.4/tm/R/aobjects.R | 106 +++++-------- tm-0.4/tm/R/chunks.R | 2 tm-0.4/tm/R/corpus.R |only tm-0.4/tm/R/distmeasure.R | 1 tm-0.4/tm/R/doc.R |only tm-0.4/tm/R/filter.R | 26 --- tm-0.4/tm/R/matrix.R | 44 ++++- tm-0.4/tm/R/meta.R | 54 ++++-- tm-0.4/tm/R/reader.R | 205 ++++++++++++++------------ tm-0.4/tm/R/source.R | 69 +++----- tm-0.4/tm/R/stopwords.R | 18 +- tm-0.4/tm/R/textrepo.R | 15 - tm-0.4/tm/R/transform.R | 107 ++++++------- tm-0.4/tm/R/weight.R | 29 --- tm-0.4/tm/data/acq.rda |binary tm-0.4/tm/data/crude.rda |binary tm-0.4/tm/inst/CITATION | 6 tm-0.4/tm/inst/NEWS | 24 +++ tm-0.4/tm/inst/doc/extensions.Rnw | 2 tm-0.4/tm/inst/doc/extensions.pdf |binary tm-0.4/tm/inst/doc/tm.Rnw | 162 ++++++++++---------- tm-0.4/tm/inst/doc/tm.pdf |binary tm-0.4/tm/man/Corpus-class.Rd |only tm-0.4/tm/man/IN-methods.Rd | 3 tm-0.4/tm/man/NewsgroupDocument-class.Rd | 28 ++- tm-0.4/tm/man/PCorpus-class.Rd |only tm-0.4/tm/man/PCorpus.Rd |only tm-0.4/tm/man/PlainTextDocument-class.Rd | 22 ++ tm-0.4/tm/man/StructuredTextDocument-class.Rd | 22 ++ tm-0.4/tm/man/TextRepository-class.Rd | 4 tm-0.4/tm/man/VCorpus-class.Rd |only tm-0.4/tm/man/VCorpus.Rd |only tm-0.4/tm/man/XMLTextDocument-class.Rd | 22 ++ tm-0.4/tm/man/acq.Rd | 5 tm-0.4/tm/man/appendElem.Rd | 11 - tm-0.4/tm/man/asPlain.Rd | 2 tm-0.4/tm/man/convertReut21578XMLPlain.Rd | 7 tm-0.4/tm/man/crude.Rd | 5 tm-0.4/tm/man/inspect.Rd | 6 tm-0.4/tm/man/materialize.Rd | 1 tm-0.4/tm/man/matrix.Rd |only tm-0.4/tm/man/meta.Rd | 1 tm-0.4/tm/man/prescindMeta.Rd | 33 ++-- tm-0.4/tm/man/readDOC.Rd | 4 tm-0.4/tm/man/readGmane.Rd | 4 tm-0.4/tm/man/readHTML.Rd | 5 tm-0.4/tm/man/readNewsgroup.Rd | 5 tm-0.4/tm/man/readPDF.Rd | 8 - tm-0.4/tm/man/readPlain.Rd | 9 - tm-0.4/tm/man/readRCV1.Rd | 4 tm-0.4/tm/man/readReut21578XML.Rd | 9 - tm-0.4/tm/man/readTabular.Rd | 6 tm-0.4/tm/man/readXML.Rd | 10 - tm-0.4/tm/man/removeSignature.Rd | 2 tm-0.4/tm/man/sFilter.Rd | 5 tm-0.4/tm/man/stopwords.Rd | 6 tm-0.4/tm/man/subset-methods.Rd | 26 +-- tm-0.4/tm/man/tmMap-methods.Rd | 11 - tm-0.4/tm/man/weightBin.Rd | 5 tm-0.4/tm/man/weightTf.Rd | 4 tm-0.4/tm/man/weightTfIdf.Rd | 5 74 files changed, 632 insertions(+), 599 deletions(-)
Author: D.J.J. Walvoort, D.J. Brus, and J.J. de Gruijter
Title: Spatial Coverage Sampling
Description: Spatial coverage sampling and random sampling from compact
geographical strata created by k-means.
Diff between spcosa versions 0.1-3 dated 2009-05-17 and 0.1-4 dated 2009-07-01
spcosa-0.1-3/spcosa/tests/runTestSuite.Rout |only spcosa-0.1-4/spcosa/DESCRIPTION | 12 spcosa-0.1-4/spcosa/NEWS | 38 spcosa-0.1-4/spcosa/R/method_getCellSize-CompactStratification.R | 2 spcosa-0.1-4/spcosa/R/method_getNumberOfCells-CompactStratification.R | 2 spcosa-0.1-4/spcosa/R/method_setAs_CompactStratification-SpatialPixels.R | 2 spcosa-0.1-4/spcosa/R/method_setAs_CompactStratification-SpatialPixelsDataFrame.R | 8 spcosa-0.1-4/spcosa/R/method_spsample_CompactStratification-numeric-missing.R | 1 spcosa-0.1-4/spcosa/inst/doc/spcosa.pdf | 2077 ++++------ spcosa-0.1-4/spcosa/man/stratify-methods.Rd | 6 spcosa-0.1-4/spcosa/tests/unitTesting.html | 18 11 files changed, 1019 insertions(+), 1147 deletions(-)
Author: Kurt Hornik, David Meyer, Christian Buchta
Title: Sparse Lightweight Arrays and Matrices
Description: Data structures and algorithms for sparse arrays and
matrices, based on index arrays and simple triplet
representations, respectively.
Diff between slam versions 0.1 dated 2009-06-26 and 0.1-1 dated 2009-07-01
DESCRIPTION | 10 +++++----- NAMESPACE | 24 ++++++++++++++++++++++++ R/matrix.R | 12 ++++++++++++ R/stm.R |only man/crossprod.Rd |only man/sums.Rd |only src |only tests |only 8 files changed, 41 insertions(+), 5 deletions(-)
Author: Delphine Charif and Jean R. Lobry and Anamaria Necsulea and
Leonor Palmeira and Simon Penel
Title: Biological Sequences Retrieval and Analysis
Description: Exploratory data analysis and data visualization for
biological sequence (DNA and protein) data. Include also
utilities for sequence data management under the ACNUC system.
Diff between seqinr versions 2.0-3 dated 2009-04-28 and 2.0-4 dated 2009-07-01
DESCRIPTION | 10 R/readBins.R | 9 R/readPanels.R | 7 inst/abif/Prototype_PowerPlex_EP01_Bins.txt |only inst/abif/Prototype_PowerPlex_EP01_Pa.txt |only inst/doc/seqinr_2_0-3.pdf | 8400 ++++++++++++++-------------- inst/doc/src/appendix/releasenotes.rnw | 28 man/readBins.Rd | 8 man/readPanels.Rd | 7 9 files changed, 4268 insertions(+), 4201 deletions(-)
Author: Julien Barnier
Title: Functions to make R usage in social sciences easier (in french)
Description: This package provides functions for beginners and social
sciences students or researchers. Currently it includes
functions for cross-tabulation, weighting, results export, and
maps plotting. The documentation and help pages are written in
french.
Diff between rgrs versions 0.2-10 dated 2009-06-09 and 0.2-11 dated 2009-07-01
DESCRIPTION | 10 +++++----- R/copie.default.R | 10 ++++++---- data/hdv2003.rda |binary 3 files changed, 11 insertions(+), 9 deletions(-)
Author: Kurt Hornik and David Meyer
Title: Data Structures and Algorithms for Relations
Description: Data structures and algorithms for k-ary relations with
arbitrary domains, featuring relational algebra, predicate
functions, and fitters for consensus relations.
Diff between relations versions 0.5-1 dated 2009-02-20 and 0.5-2 dated 2009-07-01
relations-0.5-1/relations/R/sparse.R |only relations-0.5-2/relations/DESCRIPTION | 20 + relations-0.5-2/relations/NAMESPACE | 23 -- relations-0.5-2/relations/NEWS | 4 relations-0.5-2/relations/R/fitters.R | 6 relations-0.5-2/relations/R/mip.R | 44 ++-- relations-0.5-2/relations/R/relation.R | 5 relations-0.5-2/relations/inst/NEWS | 4 relations-0.5-2/relations/inst/doc/relations.pdf |binary relations-0.5-2/relations/inst/po/en@quot/LC_MESSAGES/R-relations.mo |binary relations-0.5-2/relations/po/R-en@quot.po | 105 ++++++---- relations-0.5-2/relations/po/R-relations.pot | 82 +++++-- 12 files changed, 178 insertions(+), 115 deletions(-)
Author: Karl W Broman
Title: Datasets for the R/qtl book
Description: Datasets for the book, A Guide to QTL Mapping with R/qtl
Diff between qtlbook versions 0.17-1 dated 2009-04-28 and 0.17-2 dated 2009-07-01
DESCRIPTION | 10 +++++----- inst/CITATION |only inst/STATUS.txt | 7 +++++++ man/ch3a.Rd | 5 +++++ man/ch3b.Rd | 5 +++++ man/ch3c.Rd | 5 +++++ 6 files changed, 27 insertions(+), 5 deletions(-)
Author: Karl W Broman and Hao Wu, with ideas
from Gary Churchill and Saunak Sen and contributions from Brian
Yandell
Title: Tools for analyzing QTL experiments
Description: Analysis of experimental crosses to identify genes (called
quantitative trait loci, QTLs) contributing to variation in
quantitative traits.
Diff between qtl versions 1.11-12 dated 2009-03-29 and 1.12-26 dated 2009-07-01
qtl-1.11-12/qtl/src/hmm_cc.c |only qtl-1.11-12/qtl/src/hmm_cc.h |only qtl-1.11-12/qtl/src/simulate_cc.c |only qtl-1.11-12/qtl/src/simulate_cc.h |only qtl-1.12-26/qtl/DESCRIPTION | 12 qtl-1.12-26/qtl/INDEX | 6 qtl-1.12-26/qtl/R/add.cim.covar.R | 13 qtl-1.12-26/qtl/R/add_threshold.R | 57 +++- qtl-1.12-26/qtl/R/addqtl.R | 21 + qtl-1.12-26/qtl/R/argmax.geno.R | 35 +- qtl-1.12-26/qtl/R/arithscan.R | 31 +- qtl-1.12-26/qtl/R/calc.genoprob.R | 59 +++- qtl-1.12-26/qtl/R/calc.pairprob.R | 54 ++-- qtl-1.12-26/qtl/R/cim.R | 19 - qtl-1.12-26/qtl/R/compareorder.R | 25 - qtl-1.12-26/qtl/R/countXO.R | 49 ++- qtl-1.12-26/qtl/R/discan.R | 13 qtl-1.12-26/qtl/R/effectplot.R | 13 qtl-1.12-26/qtl/R/effectscan.R | 13 qtl-1.12-26/qtl/R/errorlod.R | 21 - qtl-1.12-26/qtl/R/est.map.R | 27 +- qtl-1.12-26/qtl/R/est.rf.R | 31 +- qtl-1.12-26/qtl/R/fitqtl.R | 16 - qtl-1.12-26/qtl/R/fitstahl.R | 13 qtl-1.12-26/qtl/R/makeqtl.R | 13 qtl-1.12-26/qtl/R/map_construction.R | 13 qtl-1.12-26/qtl/R/plot.R | 27 +- qtl-1.12-26/qtl/R/plot.scanone.R | 19 - qtl-1.12-26/qtl/R/plot.scantwo.R | 22 - qtl-1.12-26/qtl/R/plotModel.R | 13 qtl-1.12-26/qtl/R/plotperm.R | 13 qtl-1.12-26/qtl/R/qtlcart_io.R | 13 qtl-1.12-26/qtl/R/read.cross.R | 39 +- qtl-1.12-26/qtl/R/read.cross.csv.R | 35 -- qtl-1.12-26/qtl/R/read.cross.csvs.R | 24 - qtl-1.12-26/qtl/R/read.cross.gary.R | 13 qtl-1.12-26/qtl/R/read.cross.karl.R | 13 qtl-1.12-26/qtl/R/read.cross.mm.R | 13 qtl-1.12-26/qtl/R/read.cross.qtx.R | 13 qtl-1.12-26/qtl/R/readMWril.R |only qtl-1.12-26/qtl/R/refineqtl.R | 13 qtl-1.12-26/qtl/R/replacemap.R | 20 - qtl-1.12-26/qtl/R/ril48_reorg.R |only qtl-1.12-26/qtl/R/ripple.R | 33 +- qtl-1.12-26/qtl/R/scanone.R | 47 ++- qtl-1.12-26/qtl/R/scanoneboot.R | 13 qtl-1.12-26/qtl/R/scanqtl.R | 13 qtl-1.12-26/qtl/R/scantwo.R | 74 +++-- qtl-1.12-26/qtl/R/sim.geno.R | 38 ++ qtl-1.12-26/qtl/R/sim_ril.R | 244 +++++++++++------- qtl-1.12-26/qtl/R/simulate.R | 54 +++- qtl-1.12-26/qtl/R/stepwiseqtl.R | 17 - qtl-1.12-26/qtl/R/summary.cross.R | 60 ++-- qtl-1.12-26/qtl/R/summary.scanone.R | 47 ++- qtl-1.12-26/qtl/R/summary.scantwo.R | 67 +++-- qtl-1.12-26/qtl/R/summary.scantwo.old.R | 13 qtl-1.12-26/qtl/R/tryallpositions.R | 27 +- qtl-1.12-26/qtl/R/util.R | 301 +++++++++++++++++++++- qtl-1.12-26/qtl/R/vbscan.R | 13 qtl-1.12-26/qtl/R/write.cross.R | 13 qtl-1.12-26/qtl/R/xchr.R | 13 qtl-1.12-26/qtl/R/zzz.R | 13 qtl-1.12-26/qtl/inst/BUGS.txt | 16 + qtl-1.12-26/qtl/inst/CITATION |only qtl-1.12-26/qtl/inst/LICENSE.txt | 10 qtl-1.12-26/qtl/inst/README.txt | 12 qtl-1.12-26/qtl/inst/STATUS.txt | 152 ++++++++++- qtl-1.12-26/qtl/inst/TODO.txt | 32 +- qtl-1.12-26/qtl/inst/docs/rqtltour.R | 2 qtl-1.12-26/qtl/inst/docs/rqtltour.pdf | 344 ++++++++++++-------------- qtl-1.12-26/qtl/inst/docs/rqtltour.tex | 6 qtl-1.12-26/qtl/man/add.threshold.Rd | 4 qtl-1.12-26/qtl/man/checkAlleles.Rd | 2 qtl-1.12-26/qtl/man/chrnames.Rd |only qtl-1.12-26/qtl/man/clean.cross.Rd | 3 qtl-1.12-26/qtl/man/clean.scantwo.Rd | 13 qtl-1.12-26/qtl/man/compareorder.Rd | 2 qtl-1.12-26/qtl/man/findDupMarkers.Rd |only qtl-1.12-26/qtl/man/geno.crosstab.Rd | 5 qtl-1.12-26/qtl/man/listeria.Rd | 2 qtl-1.12-26/qtl/man/max.scanone.Rd | 2 qtl-1.12-26/qtl/man/plot.rf.Rd | 5 qtl-1.12-26/qtl/man/plot.scanone.Rd | 2 qtl-1.12-26/qtl/man/qtl-internal.Rd | 30 +- qtl-1.12-26/qtl/man/readMWril.Rd |only qtl-1.12-26/qtl/man/ripple.Rd | 2 qtl-1.12-26/qtl/man/scanone.Rd | 7 qtl-1.12-26/qtl/man/scantwo.Rd | 14 - qtl-1.12-26/qtl/man/sim.cross.Rd | 88 ++++++ qtl-1.12-26/qtl/man/simFounderSnps.Rd |only qtl-1.12-26/qtl/man/subset.cross.Rd | 9 qtl-1.12-26/qtl/man/subset.map.Rd |only qtl-1.12-26/qtl/man/summary.scanone.Rd | 6 qtl-1.12-26/qtl/man/summary.scantwo.Rd | 4 qtl-1.12-26/qtl/man/switch.order.Rd | 2 qtl-1.12-26/qtl/man/tryallpositions.Rd | 8 qtl-1.12-26/qtl/man/xaxisloc.scanone.Rd |only qtl-1.12-26/qtl/src/countXO.c | 32 +- qtl-1.12-26/qtl/src/countXO.h | 31 +- qtl-1.12-26/qtl/src/discan.c | 13 qtl-1.12-26/qtl/src/discan.h | 13 qtl-1.12-26/qtl/src/discan_covar.c | 13 qtl-1.12-26/qtl/src/discan_covar.h | 13 qtl-1.12-26/qtl/src/effectscan.c | 13 qtl-1.12-26/qtl/src/effectscan.h | 13 qtl-1.12-26/qtl/src/findDupMarkers_notexact.c |only qtl-1.12-26/qtl/src/findDupMarkers_notexact.h |only qtl-1.12-26/qtl/src/fitqtl_hk.c | 13 qtl-1.12-26/qtl/src/fitqtl_hk.h | 13 qtl-1.12-26/qtl/src/fitqtl_imp.c | 13 qtl-1.12-26/qtl/src/fitqtl_imp.h | 13 qtl-1.12-26/qtl/src/forwsel.c | 13 qtl-1.12-26/qtl/src/forwsel.h | 13 qtl-1.12-26/qtl/src/hmm_4way.c | 23 - qtl-1.12-26/qtl/src/hmm_4way.h | 13 qtl-1.12-26/qtl/src/hmm_bc.c | 19 - qtl-1.12-26/qtl/src/hmm_bc.h | 13 qtl-1.12-26/qtl/src/hmm_bci.c | 13 qtl-1.12-26/qtl/src/hmm_bci.h | 13 qtl-1.12-26/qtl/src/hmm_f2.c | 23 - qtl-1.12-26/qtl/src/hmm_f2.h | 15 - qtl-1.12-26/qtl/src/hmm_f2i.c | 13 qtl-1.12-26/qtl/src/hmm_f2i.h | 13 qtl-1.12-26/qtl/src/hmm_main.c | 35 +- qtl-1.12-26/qtl/src/hmm_main.h | 21 - qtl-1.12-26/qtl/src/hmm_ri4self.c |only qtl-1.12-26/qtl/src/hmm_ri4self.h |only qtl-1.12-26/qtl/src/hmm_ri4sib.c |only qtl-1.12-26/qtl/src/hmm_ri4sib.h |only qtl-1.12-26/qtl/src/hmm_ri8self.c |only qtl-1.12-26/qtl/src/hmm_ri8self.h |only qtl-1.12-26/qtl/src/hmm_ri8sib.c |only qtl-1.12-26/qtl/src/hmm_ri8sib.h |only qtl-1.12-26/qtl/src/info.c | 13 qtl-1.12-26/qtl/src/info.h | 13 qtl-1.12-26/qtl/src/lapackutil.c | 13 qtl-1.12-26/qtl/src/lapackutil.h | 13 qtl-1.12-26/qtl/src/ril48_reorg.c |only qtl-1.12-26/qtl/src/ril48_reorg.h |only qtl-1.12-26/qtl/src/ripple.c | 75 ++++- qtl-1.12-26/qtl/src/ripple.h | 46 ++- qtl-1.12-26/qtl/src/scanone_ehk.c | 13 qtl-1.12-26/qtl/src/scanone_ehk.h | 13 qtl-1.12-26/qtl/src/scanone_em.c | 13 qtl-1.12-26/qtl/src/scanone_em.h | 13 qtl-1.12-26/qtl/src/scanone_em_covar.c | 13 qtl-1.12-26/qtl/src/scanone_em_covar.h | 13 qtl-1.12-26/qtl/src/scanone_hk.c | 13 qtl-1.12-26/qtl/src/scanone_hk.h | 13 qtl-1.12-26/qtl/src/scanone_imp.c | 13 qtl-1.12-26/qtl/src/scanone_imp.h | 13 qtl-1.12-26/qtl/src/scanone_mr.c | 13 qtl-1.12-26/qtl/src/scanone_mr.h | 13 qtl-1.12-26/qtl/src/scanone_np.c | 13 qtl-1.12-26/qtl/src/scanone_np.h | 13 qtl-1.12-26/qtl/src/scantwo_binary_em.c | 13 qtl-1.12-26/qtl/src/scantwo_binary_em.h | 13 qtl-1.12-26/qtl/src/scantwo_em.c | 13 qtl-1.12-26/qtl/src/scantwo_em.h | 13 qtl-1.12-26/qtl/src/scantwo_hk.c | 13 qtl-1.12-26/qtl/src/scantwo_hk.h | 13 qtl-1.12-26/qtl/src/scantwo_imp.c | 13 qtl-1.12-26/qtl/src/scantwo_imp.h | 13 qtl-1.12-26/qtl/src/scantwo_mr.c | 13 qtl-1.12-26/qtl/src/scantwo_mr.h | 13 qtl-1.12-26/qtl/src/simulate.c | 13 qtl-1.12-26/qtl/src/simulate.h | 13 qtl-1.12-26/qtl/src/simulate_ril.c |only qtl-1.12-26/qtl/src/simulate_ril.h |only qtl-1.12-26/qtl/src/stahl_mf.c | 13 qtl-1.12-26/qtl/src/stahl_mf.h | 13 qtl-1.12-26/qtl/src/summary_scantwo.c | 13 qtl-1.12-26/qtl/src/summary_scantwo.h | 13 qtl-1.12-26/qtl/src/util.c | 75 ++++- qtl-1.12-26/qtl/src/util.h | 45 ++- qtl-1.12-26/qtl/src/vbscan.c | 13 qtl-1.12-26/qtl/src/vbscan.h | 13 qtl-1.12-26/qtl/tests/test_io.R | 13 qtl-1.12-26/qtl/tests/test_io.Rout.save | 29 +- 179 files changed, 2449 insertions(+), 1463 deletions(-)
In case you missed them, here are some articles from last month of particular interest to R users.
Author: William Revelle
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A number of routines for personality, psychometrics and
experimental psychology. Functions are primarily for scale
construction using factor analysis, cluster analysis and
reliability analysis, although others provide basic descriptive
statistics. Functions for simulating particular item and test
structures are included. Several functions serve as a useful
front end for structural equation modeling. For more
information, see the personality-project.org/r webpage.
Diff between psych versions 1.0-74 dated 2009-06-26 and 1.0-75 dated 2009-07-01
CHANGES | 6 DESCRIPTION | 8 R/fa.R | 1 R/omega.R | 2 R/principal.R | 2 R/print.psych.fa.R | 6 R/smc.R | 2 data/Harman.rda |only inst/NEWS | 5 inst/doc/all.bib | 584 +- inst/doc/overview.Rnw | 45 inst/doc/overview.pdf | 9090 ++++++++++++++++++++-------------------- inst/doc/psych_for_sem.Rnw | 29 inst/doc/psych_for_sem.pdf | 9988 ++++++++++++++++++++++----------------------- man/00.psych-package.Rd | 12 man/Harman.Rd |only man/ICLUST.Rd | 1 man/ICLUST.graph.Rd | 1 man/ICLUST.sort.Rd | 1 man/SD.Rd | 1 man/VSS.parallel.Rd | 1 man/VSS.plot.Rd | 1 man/VSS.scree.Rd | 6 man/bifactor.Rd | 1 man/circ.tests.Rd | 2 man/cluster.cor.Rd | 2 man/cluster.fit.Rd | 1 man/cluster.loadings.Rd | 1 man/count.pairwise.Rd | 1 man/describe.Rd | 1 man/describe.by.Rd | 1 man/eigen.loadings.Rd | 1 man/ellipses.Rd | 1 man/error.bars.Rd | 1 man/error.crosses.Rd | 1 man/fa.Rd | 2 man/fa.graph.Rd | 1 man/fa.parallel.Rd | 1 man/factor.congruence.Rd | 1 man/factor.fit.Rd | 1 man/factor.model.Rd | 1 man/factor.residuals.Rd | 1 man/factor.rotate.Rd | 1 man/factor2cluster.Rd | 1 man/geometric.mean.Rd | 1 man/harmonic.mean.Rd | 1 man/irt.item.diff.rasch.Rd | 1 man/irt.person.rasch.Rd | 1 man/mat.regress.Rd | 1 man/matrix.addition.Rd | 1 man/multi.hist.Rd | 1 man/omega.Rd | 3 man/omega.graph.Rd | 1 man/p.rep.Rd | 1 man/pairs.panels.Rd | 1 man/phi.demo.Rd | 1 man/phi2poly.Rd | 1 man/polar.Rd | 1 man/poly.mat.Rd | 5 man/polychor.matrix.Rd | 1 man/principal.Rd | 2 man/r.test.Rd | 1 man/read.clipboard.Rd | 1 man/schmid.Rd | 1 man/score.alpha.Rd | 1 man/score.items.Rd | 1 man/sim.VSS.Rd | 1 man/sim.congeneric.Rd | 1 man/sim.hierarchical.Rd | 1 man/sim.item.Rd | 1 man/simulation.circ.Rd | 1 man/table2matrix.Rd | 1 man/test.psych.Rd | 1 man/thurstone.Rd | 6 74 files changed, 10199 insertions(+), 9659 deletions(-)
Author: Karl W Broman
Title: Estimating the number of essential genes in a genome
Description: Estimating the number of essential genes in a genome on
the basis of data from a random transposon mutagenesis
experiment, through the use of a Gibbs sampler.
Diff between negenes versions 0.98-7 dated 2007-10-09 and 0.98-8 dated 2009-07-01
DESCRIPTION | 14 +++++++++----- inst/CITATION |only inst/STATUS.txt | 5 +++++ 3 files changed, 14 insertions(+), 5 deletions(-)
Author: Chris Fraley and Adrian Raftery
Title: Model-Based Clustering / Normal Mixture Modeling
Description: Model-based clustering and normal mixture modeling
including Bayesian regularization
Diff between mclust versions 3.2.1 dated 2009-06-19 and 3.3.1 dated 2009-07-01
mclust-3.2.1/mclust/README |only mclust-3.3.1/mclust/CHANGELOG | 23 ++ mclust-3.3.1/mclust/DESCRIPTION | 6 mclust-3.3.1/mclust/R/mclust.R | 262 +++++++++++++++++++++--------- mclust-3.3.1/mclust/core |only mclust-3.3.1/mclust/man/Mclust.Rd | 14 + mclust-3.3.1/mclust/man/decomp2sigma.Rd | 6 mclust-3.3.1/mclust/man/defaultPrior.Rd | 12 - mclust-3.3.1/mclust/man/em.Rd | 12 - mclust-3.3.1/mclust/man/emE.Rd | 12 - mclust-3.3.1/mclust/man/mclustBIC.Rd | 17 + mclust-3.3.1/mclust/man/mclustVariance.Rd | 7 mclust-3.3.1/mclust/man/me.Rd | 17 + mclust-3.3.1/mclust/man/meE.Rd | 17 + mclust-3.3.1/mclust/man/priorControl.Rd | 12 - mclust-3.3.1/mclust/man/sigma2decomp.Rd | 8 mclust-3.3.1/mclust/man/unmap.Rd | 9 - 17 files changed, 307 insertions(+), 127 deletions(-)
Author: Toni Giorgino ,
Title: Dynamic Time Warping algorithms
Description: Comprehensive implementation of Dynamic Time Warping
algorithms in R. DTW finds the optimal (least cumulative
distance) mapping between two time series. All common DTW
variants are covered, including local and global constraints,
arbitrary timeseries lenghts, distance definitions, MVM, etc.
Package computes cumulative distance, warping functions, plots,
normalizations, etc.
Diff between dtw versions 1.12-5 dated 2009-01-07 and 1.13-1 dated 2009-07-01
DESCRIPTION | 25 +++++++++++++---------- NAMESPACE |only R/dtw.R | 13 +++++++++++- R/globalCostMatrix.R | 4 +-- R/plot.dtw.R | 7 +++--- R/window.R | 6 +---- R/zzz.R | 16 +++++---------- inst/ChangeLog | 6 +++++ inst/TODO | 46 ++++++++++---------------------------------- inst/dtw.bib | 49 +++++++++++++++++++++++++++++++++++++++++++++++ man/dtw-package.Rd | 8 +++---- man/dtw.Rd | 2 + man/dtwPlot.Rd | 13 +++++++----- man/stepPattern.Rd | 6 ++--- tests/dtw_test.R | 21 ++++++++++++++++---- tests/dtw_test.Rout.save | 25 ++++++++++++++++++----- 16 files changed, 159 insertions(+), 88 deletions(-)
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification
and regression models
Diff between caret versions 4.18 dated 2009-06-18 and 4.19 dated 2009-07-01
DESCRIPTION | 8 R/createModel.R | 185 +++++++++- R/misc.R | 2 R/predict.train.R | 2 R/predictionFunction.R | 1 R/train.default.R | 25 - inst/CHANGES | 11 inst/doc/caretMisc.pdf | 782 ++++++++++++++++++++++---------------------- inst/doc/caretSelection.pdf | 637 +++++++++++++++++------------------ inst/doc/caretTrain.pdf |binary inst/doc/caretVarImp.pdf |binary man/train.Rd | 4 12 files changed, 911 insertions(+), 746 deletions(-)
Author: Tomas William Fitzgerald
Title: Robust spline interpolation for dual color array comparative
genomic hybridisation data
Description: Spline fitting and interpolation
Diff between aCGH.Spline versions 1.0 dated 2009-06-24 and 2.1 dated 2009-07-01
DESCRIPTION | 10 +++++----- R/GenomePlot.R | 1 + R/Jspline.R | 7 ++++--- R/SetJ.R | 1 + R/WriteGFF.R | 2 +- R/fe.write.R | 3 ++- 6 files changed, 14 insertions(+), 10 deletions(-)
Author: Adrian Dusa
Title: Qualitative Comparative Analysis
Description: Performs the Quine-McCluskey algorithm for Qualitative
Comparative Analysis, as described in Ragin, Charles C. 1987
"The Comparative Method. Moving beyond qualitative and
quantitative strategies", Berkeley: University of California
Press. In the classical approach it currently handles about 15
conditions and one outcome, but since version 0.4-5 the package
has an enhanced, faster function that obtains the same exact
solutions with a substantially lower memory consumption, and it
handles even more causal conditions. The next versions of this
algorithm will be oriented towards multi-value and fuzzy-set
functions. Also, in the near future the current functions will
deal with missing values in the data
Diff between QCA versions 0.5-3 dated 2009-03-28 and 0.5-4 dated 2009-07-01
DESCRIPTION | 10 +++++----- R/eqmcc.R | 18 +++++++++--------- R/qmcc.R | 23 ++++++++++++----------- R/verifyQCA.R | 2 +- R/writePrimeimp.R | 6 +++--- inst/CHANGES | 6 +++++- man/QCA.package.Rd | 4 ++-- 7 files changed, 37 insertions(+), 32 deletions(-)
REvolution Computing has just released three new packages for R to CRAN (under the open-source Apache 2.0 license): foreach, iterators, and doMC. Together, they provide a simple, scalable parallel computing framework for R that lets you take advantage of your multicore or multiprocessor workstation to program loops that run faster than traditional loops in R.
install.packages("foreach")
install.packages("doMC")
Here's a new use for R: designing T-shirts for a band:
Author: Martin Schlather
Title: Simulation and Analysis of Random Fields
Description: Simulation of Gaussian and extreme value random fields;
conditional simulation; kriging
Diff between RandomFields versions 1.3.39 dated 2009-06-29 and 1.3.40 dated 2009-07-01
DESCRIPTION | 6 +++--- src/auxiliary.cc | 6 +++--- 2 files changed, 6 insertions(+), 6 deletions(-)
Author: Kurt Hornik, with contributions from Christian Buchta, Torsten
Hothorn, Alexandros Karatzoglou, David Meyer, and Achim Zeileis
Title: R/Weka interface
Description: An R interface to Weka (Version 3.6.1). Weka is a
collection of machine learning algorithms for data mining tasks
written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Both the R interface and Weka itself are
contained in the RWeka package. For more information on Weka
see http://www.cs.waikato.ac.nz/~ml/weka/.
Diff between RWeka versions 0.3-19 dated 2009-06-09 and 0.3-20 dated 2009-07-01
CHANGELOG | 6 +++++- DESCRIPTION | 10 +++++----- R/classifiers.R | 20 +++++++++++++------- R/onLoad.R | 10 ++-------- R/readers.R | 38 +++++++++++++++++++------------------- inst/java/RWeka.jar |binary inst/java/weka.jar |binary java/Makefile | 20 ++++++++++++++++++++ 8 files changed, 64 insertions(+), 40 deletions(-)
Author: Jose L. Izquierdo Instituto de Estudios
Biofuncionales(U.C.M.).
Title: GUI for Metabonomic Analysis
Description: Graphical User Interface for the Metabonomic Analysis
(Baseline, Normalization, Peak Detection, PCA, PLS, Nearest
Neigbourgt, Neural Network) developed to make easy this data
analysis.
Diff between Metabonomic versions 3.1.3.3 dated 2009-05-12 and 3.2 dated 2009-07-01
Metabonomic-3.1.3.3/Metabonomic/R/Met.Baseline.R |only Metabonomic-3.1.3.3/Metabonomic/R/Met.LDA.multi.R |only Metabonomic-3.1.3.3/Metabonomic/R/Met.LDA.multi2.R |only Metabonomic-3.1.3.3/Metabonomic/R/Met.PLS2.multi.R |only Metabonomic-3.1.3.3/Metabonomic/R/Met.PLS2.multi2.R |only Metabonomic-3.1.3.3/Metabonomic/R/Met.PLS3D.R |only Metabonomic-3.1.3.3/Metabonomic/man/Met.Baseline.Rd |only Metabonomic-3.1.3.3/Metabonomic/man/Met.LDA.multi.Rd |only Metabonomic-3.1.3.3/Metabonomic/man/Met.LDA.multi2.Rd |only Metabonomic-3.1.3.3/Metabonomic/man/Met.PLS2.multi.Rd |only Metabonomic-3.1.3.3/Metabonomic/man/Met.PLS2.multi2.Rd |only Metabonomic-3.1.3.3/Metabonomic/man/Met.PLS3D.Rd |only Metabonomic-3.2/Metabonomic/DESCRIPTION | 10 Metabonomic-3.2/Metabonomic/R/Import.data.R | 36 Metabonomic-3.2/Metabonomic/R/Met.KNN.R | 168 - Metabonomic-3.2/Metabonomic/R/Met.LDA.R | 611 ++-- Metabonomic-3.2/Metabonomic/R/Met.Load.Data.R | 2 Metabonomic-3.2/Metabonomic/R/Met.NN1.R | 165 - Metabonomic-3.2/Metabonomic/R/Met.NN2.R | 239 - Metabonomic-3.2/Metabonomic/R/Met.PLS1.R | 109 Metabonomic-3.2/Metabonomic/R/Met.PLS2.R | 2223 ++++------------- Metabonomic-3.2/Metabonomic/R/Met.Selection.R | 319 -- Metabonomic-3.2/Metabonomic/R/Phase.correction.R | 376 +- Metabonomic-3.2/Metabonomic/inst |only 24 files changed, 1435 insertions(+), 2823 deletions(-)
Author: Andrew D. Martin , Kevin M. Quinn
, Jong Hee Park
Title: Markov chain Monte Carlo (MCMC) Package
Description: This package contains functions to perform Bayesian
inference using posterior simulation for a number of
statistical models. Most simulation is done in compiled C++
written in the Scythe Statistical Library Version 1.0.2. All
models return coda mcmc objects that can then be summarized
using the coda package. MCMCpack also contains some useful
utility functions, including some additional density functions
and pseudo-random number generators for statistical
distributions, a general purpose Metropolis sampling algorithm,
and tools for visualization.
Diff between MCMCpack versions 0.9-6 dated 2009-02-17 and 1.0-1 dated 2009-07-01
DESCRIPTION | 32 +++++++++++++++++--------------- HISTORY | 1 + NAMESPACE | 1 + R/MCMCdynamicIRT1d-b.R |only R/MCMCdynamicIRT1d.R |only data/Rehnquist.rda |only man/MCMCdynamicIRT1d.Rd |only man/MCMCirtKd.Rd | 2 +- man/Rehnquist.Rd |only src/MCMCdynamicIRT1d-b.cc |only src/MCMCdynamicIRT1d.cc |only 11 files changed, 20 insertions(+), 16 deletions(-)
Author: Klaus Nordhausen, Jean-Francois Cardoso, Hannu Oja, Esa Ollila
Title: JADE and ICA performance criteria
Description: The package ports JF Cardoso's JADE algorithm as well as
his function for joint diagonalization. There are also several
criteria for performance evaluation of ICA algorithms.
Diff between JADE versions 1.0-2 dated 2009-04-22 and 1.0-3 dated 2009-07-01
DESCRIPTION | 8 ++++---- R/JADE.R | 10 ++++++++-- inst/CHANGES | 5 +++++ man/ComonGAP.Rd | 2 +- man/JADE-package.Rd | 4 ++-- man/JADE.Rd | 14 ++++++++++++++ man/rjd.Rd | 3 ++- 7 files changed, 36 insertions(+), 10 deletions(-)
Author: Hadley Wickham , Di Cook ,
Andreas Buja , Barret Schloerke
Title: R interface to DescribeDisplay (GGobi plugin)
Description: Produce publication quality graphics from output of
GGobi's describe display plugin
Diff between DescribeDisplay versions 0.2.0 dated 2009-05-15 and 0.2.1 dated 2009-07-01
DESCRIPTION | 6 +++--- NAMESPACE |only R/data.r | 16 +++++++++++----- R/ggplot-barchart.r | 12 +++++++----- R/ggplot-parcoords.r | 3 +++ R/ggplot-scatmat.r | 1 + R/ggplot-timeseries.r | 6 +++++- R/ggplot.r | 5 ++++- man/addbrush.Rd | 4 +--- man/ddpanelGrob.Rd | 4 +--- man/ggplot.ddplot.Rd | 3 +-- man/ggplot.parcoords.Rd | 3 +-- man/plot.dd.Rd | 3 +-- man/plot.ddplot.Rd | 4 +--- 14 files changed, 40 insertions(+), 30 deletions(-)
Via an email correspondent (who seemed to be fishing for some reaction) and Margaret Soltan at University Diaries comes word of a rather sordid bit of misbehavior by a presumably-to-be-soon-if-not-already-former faculty member and administrator (probably more the latter than the former) at Duke University:
A Duke University official has been arrested and charged with offering a 5-year-boy for sex.
Frank Lombard, the school’s associate director of the Center for Health Policy, was arrested after an Internet sting, according to the FBI’s Washington field office and the city’s police department.
If these allegations are true—and I have no reason to believe they are not—it seems to me that Lombard should at the very least rot in jail for a very, very long time.
How is it that a company like Apple can produce wonderful user interfaces, but open-source UIs are generally, well, substandard? Matthew Thomas suggested back in 2002 that too many cooks can spoil the broth:
Every contributor to the [open-source] project tries to take part in the interface design, regardless of how little they know about the subject. And once you have more than one designer, you get inconsistency, both in vision and in detail. The quality of an interface design is inversely proportional to the number of designers.
You need a little more than open source, it seems, to make products usable. You need control, and control doesn't always jibe well with open-source development. This is one reason that we're seeing the emergence of the Open Core licensing model for open source.
Author: Peter K Dunn
Title: Tweedie exponential family models
Description: Maximum likelihood computations for Tweedie families.
Diff between tweedie versions 1.6.6 dated 2009-06-19 and 1.6.7 dated 2009-06-30
CHANGE.log | 4 ++++ DESCRIPTION | 8 ++++---- R/tweedie.R | 2 +- man/tweedie-package.Rd | 6 +++--- src/tweedie.f | 14 +++++++------- 5 files changed, 19 insertions(+), 15 deletions(-)
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July 04, 2009 06:02 AM
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